RNA id: XM_034302068.1


Basic Information

Item Value
RNA id XM_034302068.1
length 1149
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC117596580
representative True

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 6363164 ~ 6368783 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acctaggtgccagaacagagaagagtctcgatgcatgccttccttgtaccctgagagatggtgggaccagtcgagtaGTGCTAGATGATCGGAGGGAGCATGTTGTAACGAGCCTTGTTCACTGAGTCTTTGTTCCAGGTTCTTGtttccctgtgtttgtgtttccttGTGTCTTTTCCTTGAGTCTTATTAAAGAagttctgcatttgcatccgtCTCCATGGACCCCCATTATGATAGATACTATGAAGTAtgataaaaccaccacatgagaaaatatatgaataaatattaatactgcatataaaatgtaaactgagtcatggaaagagtgatgaaagAGACTTTCAAAAAAGAGACATGACACAGTGGTTGTTGTGGTTTCCTGAAAAACAAAGTATATAAAAGAGAGACACTCAggaagtgtgacagtgtgtgtgtgtgtgtgtgtgtacagaagaatcagtaatgaagaagtgcttgtatcttttgtctgtGGTGTTTCACGtcgctgcaggctgtgctctctctgctgATTATAATCAGGGAGGAATAGTAGGATACACTGGGGGTTCAGTGCGgttaccctgctcctgctctgacctgcacaccaaacctcagaaattCACATGGATGAGCTACAGAACAGGAGATtggacagaaatgttaaatgatgaacgCTACCAtggcagacttcagctgtttaataacatttctcctgctaatctgtctctgctcatatctgacctgagagaagaggatcagggagtctacaggtgcagcactgagaaggaaAACAGAGACATCAGGCtttatgttaaaggCTGTGAGCTGGTGAAGAAGGCAGAGGTAGAGCGTGTGACTGTGTTCACAGGAGAGTCTGTAGTTCTGCCCTGCGTCTGCACTGACCTACAGGCCAAACCACAGTCTCTAAAATGGCAGTTTAAGGACTTTCAGGAAATTTACCCTGAACAGACTGGACATCACAGAAACAGAGTCAAACTGGTCAGAAACTCTCCAGGAAACCTCTCTCTACTCATATCAGACCTGACTGAAGAGGACCAGGGACGCTACACATGTTCTGTACAGGAAGATATAAGATATTTTAGATTATAtgttaaagtaggaagaagagaaacttcaacacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485371 lncRNA upstream 5985 6317383 ~ 6357179 (+) True LOC117596601
TU485405 lncRNA upstream 7562 6352887 ~ 6355602 (+) True G408899
TU485369 lncRNA upstream 9370 6305997 ~ 6353794 (+) True G408888
TU485370 lncRNA upstream 24484 6308127 ~ 6338680 (+) True G408889
XR_004577642.1 lncRNA upstream 24818 6337223 ~ 6338346 (+) True LOC113529309
TU485377 lncRNA downstream 1723 6370506 ~ 6371578 (+) False G408893
TU485373 lncRNA downstream 5591 6374374 ~ 6375582 (+) True G408892
TU485412 lncRNA downstream 19737 6388520 ~ 6592040 (+) True G408904
TU485414 lncRNA downstream 22412 6391195 ~ 6681409 (+) True G408906
TU485416 lncRNA downstream 27673 6396456 ~ 6437123 (+) False LOC117596579
XM_034302062.1 mRNA upstream 53911 6248061 ~ 6309253 (+) True LOC117596576
XM_026918432.2 mRNA upstream 314642 6034549 ~ 6048522 (+) True ivns1abpa
XM_026917970.2 mRNA upstream 453269 5903579 ~ 5909895 (+) True arpc5b
XM_026918214.2 mRNA upstream 499548 5848012 ~ 5863616 (+) True gabrr1
XM_026918197.2 mRNA upstream 528221 5810314 ~ 5834943 (+) True gabrr2b
XM_034301889.1 mRNA downstream 11290 6380073 ~ 6384224 (+) True LOC117596543
XM_034302066.1 mRNA downstream 26073 6394856 ~ 6437763 (+) True LOC117596579
XM_034302067.1 mRNA downstream 64103 6432886 ~ 6437763 (+) False LOC117596579
XM_034301890.1 mRNA downstream 125634 6494417 ~ 6585492 (+) True LOC117596544
XM_034302054.1 mRNA downstream 244490 6613273 ~ 6739527 (+) True LOC117596573
XR_004577658.1 other upstream 86499 6272032 ~ 6276665 (+) True LOC117596600
trnag-gcc_30 other upstream 620302 5742792 ~ 5742862 (+) True trnag-gcc_30
TU485026 other upstream 626903 5733795 ~ 5736261 (+) False lyrm2
XR_004577669.1 other upstream 1703469 4655964 ~ 4659695 (+) True LOC113529331
XR_003403042.2 other upstream 1703469 4655964 ~ 4659695 (+) False LOC113529331
TU485379 other downstream 114318 6483101 ~ 6795220 (+) True G408893
TU485443 other downstream 187580 6556363 ~ 6563776 (+) True G408929
TU485391 other downstream 480723 6849506 ~ 6851954 (+) False LOC117596594
TU486240 other downstream 1509012 7877795 ~ 7878545 (+) True G409600
TU487747 other downstream 3809266 10178049 ~ 10182672 (+) True G410936

Expression Profile