RNA id: TU485369


Basic Information

Item Value
RNA id TU485369
length 427
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G408888
representative True

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 6305997 ~ 6353794 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTGAGTGTTGTTCTTATAGAGCCTATTTATAGAGAATGATTGATGCTTTATCACTGCATTCTTTATAACTCACTAAATAGATTAATTTGAGTTCAAACTCGAGTAGGTTAACACACAATGGCCCACGACTGTTATACACAGACAGATCCACacagaaaaaagtcagaattgtgagatataaagtcgcagttacctttttaatgtttttctccgGGGCGGAAACGGGCTTCATCCCCGCGCGCTATCAATCCCCGGGTGATGACGGTGTAGATGACGTCATATTAGATGTATTGCCATGAGCATACGGCACTCGCGTCGAGCAAAGTCtacaaacactgactgttttctCTACATGTTTTTCACCATCGCAGTTGGAACTGATTGCAAACCCAAAATGTTCCCAGACAGGAGGCTTATATGATGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485359 lncRNA upstream 10614 6258093 ~ 6295383 (+) True G408879
TU485358 lncRNA upstream 48844 6256511 ~ 6257153 (+) True G408878
TU485354 lncRNA upstream 53146 6249992 ~ 6252851 (+) False LOC117596576
XR_004577650.1 lncRNA upstream 62056 6242872 ~ 6243941 (+) True LOC117596592
TU485310 lncRNA upstream 80102 6107715 ~ 6225895 (+) False G408836
TU485377 lncRNA downstream 16712 6370506 ~ 6371578 (+) False G408893
TU485373 lncRNA downstream 20580 6374374 ~ 6375582 (+) True G408892
TU485412 lncRNA downstream 34726 6388520 ~ 6592040 (+) True G408904
TU485414 lncRNA downstream 37401 6391195 ~ 6681409 (+) True G408906
TU485416 lncRNA downstream 42662 6396456 ~ 6437123 (+) False LOC117596579
XM_026918432.2 mRNA upstream 257475 6034549 ~ 6048522 (+) True ivns1abpa
XM_026917970.2 mRNA upstream 396102 5903579 ~ 5909895 (+) True arpc5b
XM_026918214.2 mRNA upstream 442381 5848012 ~ 5863616 (+) True gabrr1
XM_026918197.2 mRNA upstream 471054 5810314 ~ 5834943 (+) True gabrr2b
XM_034302068.1 mRNA downstream 9370 6363164 ~ 6368783 (+) True LOC117596580
XM_034301889.1 mRNA downstream 26279 6380073 ~ 6384224 (+) True LOC117596543
XM_034302066.1 mRNA downstream 41062 6394856 ~ 6437763 (+) True LOC117596579
XM_034302067.1 mRNA downstream 79092 6432886 ~ 6437763 (+) False LOC117596579
XM_034301890.1 mRNA downstream 140623 6494417 ~ 6585492 (+) True LOC117596544
XR_004577658.1 other upstream 29332 6272032 ~ 6276665 (+) True LOC117596600
trnag-gcc_30 other upstream 563135 5742792 ~ 5742862 (+) True trnag-gcc_30
TU485026 other upstream 569736 5733795 ~ 5736261 (+) False lyrm2
XR_004577669.1 other upstream 1646302 4655964 ~ 4659695 (+) True LOC113529331
TU485379 other downstream 129307 6483101 ~ 6795220 (+) True G408893
TU485443 other downstream 202569 6556363 ~ 6563776 (+) True G408929
TU485391 other downstream 495712 6849506 ~ 6851954 (+) False LOC117596594
TU486240 other downstream 1524001 7877795 ~ 7878545 (+) True G409600
TU487747 other downstream 3824255 10178049 ~ 10182672 (+) True G410936

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU422836 True 8901 lncRNA 0.37 2 CI01000168 481991 ~ 490923 (+)