RNA id: TU485359


Basic Information

Item Value
RNA id TU485359
length 217
lncRNA type sense_over
GC content 0.32
exon number 2
gene id G408879
representative True

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 6258093 ~ 6295383 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATACCACTGAAAGTACATCTGGTACTAATGTAATTTTATGGATAGAGGAGAATTGTTTtcaatgtatattaatataggGAAGAGCAGGGCACAATCTAACACTTTATAGTTTTTGCTCAATAGATTAACAGATACTTAAGTTAGAATAATCCACCGAAAGTAGGTAAGTTTAACTGTAACAGACAGAGGGTTAGTTTGCTAGAAAAGCCTGATAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485358 lncRNA upstream 940 6256511 ~ 6257153 (+) True G408878
TU485354 lncRNA upstream 5242 6249992 ~ 6252851 (+) False LOC117596576
XR_004577650.1 lncRNA upstream 14152 6242872 ~ 6243941 (+) True LOC117596592
TU485310 lncRNA upstream 32198 6107715 ~ 6225895 (+) False G408836
TU485314 lncRNA upstream 73909 6143711 ~ 6184184 (+) True G408838
TU485369 lncRNA downstream 10614 6305997 ~ 6353794 (+) True G408888
TU485370 lncRNA downstream 12744 6308127 ~ 6338680 (+) True G408889
TU485371 lncRNA downstream 22000 6317383 ~ 6357179 (+) True LOC117596601
XR_004577660.1 lncRNA downstream 22367 6317750 ~ 6318769 (+) False LOC117596601
XR_004577659.1 lncRNA downstream 22367 6317750 ~ 6318559 (+) False LOC117596601
XM_026918432.2 mRNA upstream 209571 6034549 ~ 6048522 (+) True ivns1abpa
XM_026917970.2 mRNA upstream 348198 5903579 ~ 5909895 (+) True arpc5b
XM_026918214.2 mRNA upstream 394477 5848012 ~ 5863616 (+) True gabrr1
XM_026918197.2 mRNA upstream 423150 5810314 ~ 5834943 (+) True gabrr2b
XM_034302068.1 mRNA downstream 67781 6363164 ~ 6368783 (+) True LOC117596580
XM_034301889.1 mRNA downstream 84690 6380073 ~ 6384224 (+) True LOC117596543
XM_034302066.1 mRNA downstream 99473 6394856 ~ 6437763 (+) True LOC117596579
XM_034302067.1 mRNA downstream 137503 6432886 ~ 6437763 (+) False LOC117596579
XM_034301890.1 mRNA downstream 199034 6494417 ~ 6585492 (+) True LOC117596544
trnag-gcc_30 other upstream 515231 5742792 ~ 5742862 (+) True trnag-gcc_30
TU485026 other upstream 521832 5733795 ~ 5736261 (+) False lyrm2
XR_004577669.1 other upstream 1598398 4655964 ~ 4659695 (+) True LOC113529331
XR_003403042.2 other upstream 1598398 4655964 ~ 4659695 (+) False LOC113529331
TU483755 other upstream 2376471 3876675 ~ 3881622 (+) False LOC117596542
TU485379 other downstream 187718 6483101 ~ 6795220 (+) True G408893
TU485443 other downstream 260980 6556363 ~ 6563776 (+) True G408929
TU485391 other downstream 554123 6849506 ~ 6851954 (+) False LOC117596594
TU486240 other downstream 1582412 7877795 ~ 7878545 (+) True G409600
TU487747 other downstream 3882666 10178049 ~ 10182672 (+) True G410936

Expression Profile