Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577660.1 |
| length | 300 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 3 |
| gene id | LOC117596601 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047624.1 |
| NCBI id | CM018570.1 |
| chromosome length | 11744058 |
| location | 6317383 ~ 6357179 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU485366 | lncRNA | upstream | 10716 | 6292393 ~ 6307034 (+) | False | LOC117596576 |
| TU485359 | lncRNA | upstream | 22367 | 6258093 ~ 6295383 (+) | True | G408879 |
| TU485358 | lncRNA | upstream | 60597 | 6256511 ~ 6257153 (+) | True | G408878 |
| TU485354 | lncRNA | upstream | 64899 | 6249992 ~ 6252851 (+) | False | LOC117596576 |
| XR_004577650.1 | lncRNA | upstream | 73809 | 6242872 ~ 6243941 (+) | True | LOC117596592 |
| XR_004577642.1 | lncRNA | downstream | 18454 | 6337223 ~ 6338346 (+) | True | LOC113529309 |
| TU485405 | lncRNA | downstream | 34118 | 6352887 ~ 6355602 (+) | True | G408899 |
| TU485377 | lncRNA | downstream | 51737 | 6370506 ~ 6371578 (+) | False | G408893 |
| TU485373 | lncRNA | downstream | 55605 | 6374374 ~ 6375582 (+) | True | G408892 |
| TU485412 | lncRNA | downstream | 69751 | 6388520 ~ 6592040 (+) | True | G408904 |
| XM_034302062.1 | mRNA | upstream | 8497 | 6248061 ~ 6309253 (+) | True | LOC117596576 |
| XM_026918432.2 | mRNA | upstream | 269228 | 6034549 ~ 6048522 (+) | True | ivns1abpa |
| XM_026917970.2 | mRNA | upstream | 407855 | 5903579 ~ 5909895 (+) | True | arpc5b |
| XM_026918214.2 | mRNA | upstream | 454134 | 5848012 ~ 5863616 (+) | True | gabrr1 |
| XM_034301907.1 | mRNA | upstream | 482807 | 5810314 ~ 5834943 (+) | False | gabrr2b |
| XM_034302068.1 | mRNA | downstream | 44395 | 6363164 ~ 6368783 (+) | True | LOC117596580 |
| XM_034301889.1 | mRNA | downstream | 61304 | 6380073 ~ 6384224 (+) | True | LOC117596543 |
| XM_034302066.1 | mRNA | downstream | 76087 | 6394856 ~ 6437763 (+) | True | LOC117596579 |
| XM_034302067.1 | mRNA | downstream | 114117 | 6432886 ~ 6437763 (+) | False | LOC117596579 |
| XM_034301890.1 | mRNA | downstream | 175648 | 6494417 ~ 6585492 (+) | True | LOC117596544 |
| XR_004577658.1 | other | upstream | 41085 | 6272032 ~ 6276665 (+) | True | LOC117596600 |
| trnag-gcc_30 | other | upstream | 574888 | 5742792 ~ 5742862 (+) | True | trnag-gcc_30 |
| TU485026 | other | upstream | 581489 | 5733795 ~ 5736261 (+) | False | lyrm2 |
| XR_004577669.1 | other | upstream | 1658055 | 4655964 ~ 4659695 (+) | True | LOC113529331 |
| TU485379 | other | downstream | 164332 | 6483101 ~ 6795220 (+) | True | G408893 |
| TU485443 | other | downstream | 237594 | 6556363 ~ 6563776 (+) | True | G408929 |
| TU485391 | other | downstream | 530737 | 6849506 ~ 6851954 (+) | False | LOC117596594 |
| TU486240 | other | downstream | 1559026 | 7877795 ~ 7878545 (+) | True | G409600 |
| TU487747 | other | downstream | 3859280 | 10178049 ~ 10182672 (+) | True | G410936 |
