RNA id: TU485405


Basic Information

Item Value
RNA id TU485405
length 248
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G408899
representative True

Chromosome Information

Item Value
chromosome id NC_047624.1
NCBI id CM018570.1
chromosome length 11744058
location 6352887 ~ 6355602 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGAAACCTCTCTCTACTCATATCAGACCTGACTGAAGAGGACCAGGGAATCTACACATGTTCTGTACAGGATGATAGCAGAGATTTCAGATTATAtgttaaagtgggaagaagagaaacttcaacacagtcgaggaaaacagacacaacacctccatcagaacagcctcagagtaaaacaacaaactctccacctgcatcatcctcaacaacactggaaggtaaacagcaaactcacagcagcctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485370 lncRNA upstream 14207 6308127 ~ 6338680 (+) True G408889
XR_004577642.1 lncRNA upstream 14541 6337223 ~ 6338346 (+) True LOC113529309
XR_004577660.1 lncRNA upstream 34118 6317750 ~ 6318769 (+) False LOC117596601
XR_004577659.1 lncRNA upstream 34328 6317750 ~ 6318559 (+) False LOC117596601
TU485366 lncRNA upstream 45853 6292393 ~ 6307034 (+) False LOC117596576
TU485377 lncRNA downstream 14904 6370506 ~ 6371578 (+) False G408893
TU485373 lncRNA downstream 18772 6374374 ~ 6375582 (+) True G408892
TU485412 lncRNA downstream 32918 6388520 ~ 6592040 (+) True G408904
TU485414 lncRNA downstream 35593 6391195 ~ 6681409 (+) True G408906
TU485416 lncRNA downstream 40854 6396456 ~ 6437123 (+) False LOC117596579
XM_034302062.1 mRNA upstream 43634 6248061 ~ 6309253 (+) True LOC117596576
XM_026918432.2 mRNA upstream 304365 6034549 ~ 6048522 (+) True ivns1abpa
XM_026917970.2 mRNA upstream 442992 5903579 ~ 5909895 (+) True arpc5b
XM_026918214.2 mRNA upstream 489271 5848012 ~ 5863616 (+) True gabrr1
XM_034301907.1 mRNA upstream 517944 5810314 ~ 5834943 (+) False gabrr2b
XM_034302068.1 mRNA downstream 7562 6363164 ~ 6368783 (+) True LOC117596580
XM_034301889.1 mRNA downstream 24471 6380073 ~ 6384224 (+) True LOC117596543
XM_034302066.1 mRNA downstream 39254 6394856 ~ 6437763 (+) True LOC117596579
XM_034302067.1 mRNA downstream 77284 6432886 ~ 6437763 (+) False LOC117596579
XM_034301890.1 mRNA downstream 138815 6494417 ~ 6585492 (+) True LOC117596544
XR_004577658.1 other upstream 76222 6272032 ~ 6276665 (+) True LOC117596600
trnag-gcc_30 other upstream 610025 5742792 ~ 5742862 (+) True trnag-gcc_30
TU485026 other upstream 616626 5733795 ~ 5736261 (+) False lyrm2
XR_004577669.1 other upstream 1693192 4655964 ~ 4659695 (+) True LOC113529331
TU485379 other downstream 127499 6483101 ~ 6795220 (+) True G408893
TU485443 other downstream 200761 6556363 ~ 6563776 (+) True G408929
TU485391 other downstream 493904 6849506 ~ 6851954 (+) False LOC117596594
TU486240 other downstream 1522193 7877795 ~ 7878545 (+) True G409600
TU487747 other downstream 3822447 10178049 ~ 10182672 (+) True G410936

Expression Profile