RNA id: AMCG00000148


Basic Information

Item Value
RNA id AMCG00000148
length 1344
RNA type mRNA
GC content 0.48
exon number 17
gene id AMCG00000148
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 5320345 ~ 5329033 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCAGAGGTAAAGGTGATGAAGATGACTATTGGAACAGTTCAAAGTTCAAAGCTTTCAcgtttgatgatgatgatgacgaatTTTCCAGGTTGAAGGAGTCGAAGAGAACAGTGAACAGGATCCGCAGTCTAgtggatgaggaggaggaggaggaggaggatgacgTGGAGAAGGTCAGCTGGAGTGGAGAGCCAGTGGGAAGCATCAGCTGGTCTATCAATGAGACCGCGTCCACCTCCCGAGTGGCCGGAGAGGTTCGGGATCAAGGATTCCCCAAGATTGACAGCACACCCTCCTTACCCAAACAGCTCTCCAGCTACTCCTTAAGCAGCCTGTTCAAAGGGCGAGGCAAACAGGGCAGTTTTCAGTCATTCTCTGATATTCTTAGTGATACGTCGTCCAAAAGTTTTGCACCAGAACTTCGAAAGCCAAAATCGGAATACAAGGACTATGTTAGTGACTGGAGCGTGGAAGAGACTATTAGACGGATGCAGAGGGGGAAGGCCTATTCCCTGGAGAAGTTCCGCTCCCTGAAGGACAAACTCCTGCTCTTAGACGCAGCAGTGGGGACACACGATGGAAACGCCATCACTGCAGTGTTGATCTTTTTGAAGAGGTCTTTAAGTAAAGaaatccTGTTTCGGGAGTTAGTGTCCAGAGAGATAGCCTTGCGGCATTATATCCACTTTCTGAAGGAAATGGGGGAACAGAAACTACTACTGGAGCTTCTCACCTCTTGCACTGATGATGCCAACCATGTTCAAGACCACTACACACTCCTGGAAAGACAGATCATTATAGAGGTGTCCGACAAGCAAGCTGAAAAAACGGGACAGATGGAGATATTTAAGAAGTACCCAAGAAAAGCTTCCATCTTAAACATGCCCATTATCACCACTCTCTACTACTCCTGCTTTTACCATTACGGGGAGGCTGAGGGCACTTACAGCAGCCCAGCAAACATCAAGAAAACATTTAAGATCTCCGAAAAACAATTTTTACTGACGGCCCTGGGGGCACGAGCCAAACAGAGGGCCTGGACTGACGTGGACAGCCTCTTCACCACAAAGAACTGGCTGGGCTACACCAAGAAAAGAGCGCCTATAGGATTCCACAGAGTTGCTGATATCCTGCAGAAAAACAATGCTCCAGTACAAGTGCTGCAGGAGTATGTGTGTTTAGTGGATGACACCGAGCTGAAGATCGCCCTGGCGCAGAAGTACAAATGTCACGATACCTACAGAGACCTGAAGGACCGACAGCAGCTGATGTTGTACAGGACTAAATTAGACCGAGGCTCTCCTGAAGAAAGGAAGATTGATGCCATCCTCAACAACACA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0007283 spermatogenesis biological_process
GO:0015031 protein transport biological_process
GO:0061008 hepaticobiliary system development biological_process
GO:0005769 early endosome cellular_component
GO:0005770 late endosome cellular_component
GO:0055037 recycling endosome cellular_component

KEGG:

id description
K23287 VIPAS39, VPS16B; VPS33B-interacting protein in polarity and apical restriction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186722 lncRNA upstream 5392 5312878 ~ 5314953 (+) False AMCG00000145
TU186651 lncRNA upstream 159150 5088439 ~ 5161195 (+) False AMCG00000136
TU186654 lncRNA upstream 160812 5132609 ~ 5159533 (+) False AMCG00000136
TU186462 lncRNA upstream 737794 4582311 ~ 4582551 (+) True G148200
TU186374 lncRNA upstream 1127312 4116753 ~ 4193033 (+) False AMCG00000113
TU186736 lncRNA downstream 10713 5339746 ~ 5340548 (+) False AMCG00000146
TU186749 lncRNA downstream 24918 5353951 ~ 5354185 (+) True G148396
TU186759 lncRNA downstream 53535 5382568 ~ 5388814 (+) True G148402
TU186817 lncRNA downstream 211646 5540679 ~ 5544478 (+) True G148452
TU186824 lncRNA downstream 348950 5677983 ~ 5678620 (+) True G148459
AMCG00000145 mRNA upstream 7384 5307190 ~ 5312961 (+) True AMCG00000145
AMCG00000139 mRNA upstream 83058 5207350 ~ 5237287 (+) True AMCG00000139
AMCG00000137 mRNA upstream 148919 5170061 ~ 5171426 (+) True AMCG00000137
AMCG00000136 mRNA upstream 162881 5140428 ~ 5157464 (+) True AMCG00000136
AMCG00000135 mRNA upstream 198115 5117082 ~ 5122230 (+) True AMCG00000135
AMCG00000146 mRNA downstream 5480 5334513 ~ 5340550 (+) True AMCG00000146
AMCG00000152 mRNA downstream 11869 5340902 ~ 5373337 (+) True AMCG00000152
AMCG00000147 mRNA downstream 46582 5375615 ~ 5380159 (+) True AMCG00000147
AMCG00000141 mRNA downstream 61292 5390325 ~ 5395773 (+) True AMCG00000141
AMCG00000142 mRNA downstream 106492 5435525 ~ 5454206 (+) True AMCG00000142
TU186262 other upstream 1559721 3760179 ~ 3760624 (+) True G148040
TU186257 other upstream 1596029 3720985 ~ 3724316 (+) True AMCG00000093
TU186234 other upstream 1624543 3693109 ~ 3695802 (+) False AMCG00000094
TU185878 other upstream 2916373 2403730 ~ 2403972 (+) True G147726
TU185496 other upstream 4203395 1063085 ~ 1116950 (+) True G147416
TU186772 other downstream 106125 5435158 ~ 5435762 (+) False AMCG00000142
TU186901 other downstream 551990 5881023 ~ 5888027 (+) True AMCG00000166
TU187068 other downstream 1142398 6471431 ~ 6474232 (+) True AMCG00000201
TU187079 other downstream 1187474 6516507 ~ 6520822 (+) False AMCG00000198
TU187266 other downstream 1961633 7290666 ~ 7296664 (+) False AMCG00000216

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000051_00729622_00743172.mRNA True 1352 mRNA 0.45 15 CI01000051 729622 ~ 743240 (+)