RNA id: TU185970


Basic Information

Item Value
RNA id TU185970
length 4737
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G147806
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3010083 ~ 3016145 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTTGTCCCTCACCCACTGATCCACACTCATGTATGCGTGCTCACAATTTTTCTCCAAGCTTTCAACACAATTCGCAACATCATGTCAACATCTttgataaaaccaaaaacacacactgcaaagcCAACTCTTGCATACTTAGATATTTTTATTCAACATCAGACAGGGaacagttctttttttttattttttttttatataaaggtTTCAAAACTTTAAGcccttaaaatgttttttaaaattcttttctttctccatgTTTATTAAACCCACACATAATGTTCATTTTGAACCAAGAAAAGCAAGCAATATAcgcaaacacaaacattatttaaacatgactagtttacaaaataaatccccACAAAGCATGTCAAAGTTGATACAACTCATTCAATAGCCCCCTAAACAGGTAGTTTTTCCCCAACATATCAgacaaatcacaaacacaagtACTTTACTtagcttttaaatgtctttctttaaAAGGTATGCTCTTGAAAAATACCCACATATTCttcattactttaaataaattatttgcattataaaaTCCTTTTAAACCATATAAATCCTTATACATGTCTATACCATTCACCATCATTATAGAGCAActttatatatctatacatatacgtataaatatacatacatacttatatatttgttatggCTTAGCATCTATATACAGCATTGAGGGAACAAAAGACTTTACCTTGGTTTCATATTTGTGGGACAGATCCACAAAGTTAAATATCAAATAAGTTAATACACAAAGGTTCTAGCCcagctagaaaaaaaaaatatatatatgactatCAGTACTCATTTTCCctaatatttgcatttactaTGTATAAATCTGAAGTGAATATGCCACAGTGTATACAGATCACCAAAGGTTAGGAAGATTTATGCACTCTGGCAACTTCAAGTGTTTCAACAACTACATTGGAAAGTAGGCATCTGTAAATGAATCACCCACTGACGGTGAGTTCTGCTACATGTTGTTAGGAAGTCCTCTAATGCAGAATGCCATGCGGGAGGCATATCCAAGACTTCCCAGGAATGGTCCCAGGACTGCttttattctcatttaaaatgcaattgatTCATGtacttaaataatgaattaaagcTGTTATTCACAAATCTGAAGAACTTATTTCACTGTAGACTGACGTCAACCACCGGTGTCATGTAAAAGTAGTCTATCTATCCCCCTGGAAACTGTTTTACCATGTCACATGTCAACGTTTTCCAACATTGCGTCTCAAACCCATTGTCAATATCTAAACATGAAAGTTATCTTTATCACAACAGcagttattatacatttaaaagatacatttagCCCATTCAATCGTAATAACACTGCATATAGTAATTTCTGTTTGTAACTTACAATCTATCTTTTGGCCACAATGGcatttcacaaaaacagcaacCCTTGTGTTATACTGAACATATTACAATCTAAAATATGTCCACAATGGAGCAGGGTTTTAAAAAACgacagacagaaaatacagaacCTTCACGTTAAAAAAACTGGGGTCTGGGTCATACAGCGCCATAAGCTATTGGCTGATCtcctaatatttaatttttacgTGACACCGGCACAATATGAAAATCTCCAAAACCTCAAATTGTTGCCGGTTTTGAATGGAAAGATATCATTCAAATTGGTTGTCATGCAAGTTACCAATCATCCTAGACACAAGGCcaactgcattttaaagcattgttaaaataaaacgtGATTAAGTGATTGTTAAGTGTGATTAGGTACACACGAGGAGTATTCAGAAAACAGCATATGTAAGATTTAAAGCTGAAAGACGAGAAGTGTTTTCTTCTGTGCTAAAACTGCAGTCAGCAAGCAGTCTCCCAGAAATCAAGTTATCTTTATGGGAGGGGGGACAAAATCCACCACTACTGCTGTATTGATTGCGGTGTGCCATTTCTGAGTAGCTGGGGATAAAATAATGTTACCAATAGCTTGTGTAGCTTGTAGACAACAAATTGCTCACTGAACACAACTCGGTCTCCTAATTTAGTGAAgattacagaaaacaacaatctGCTGTTGTTGCAGAAACCACACAAAGTGagcaaaaacatacatacatgtttttaaatgatactaGTAGCAGGAATGATAAAAAGCTTCAtgattaacattaatattttatctaTGTCTTTTGGTCACAACTGTAAAAAGTGCAACAATAAAACCATATATTTTCCTCTGGTGTcgaaaaaatatttagtttttactgttttttggTACAGCTTTCCAAGCCCCAGTTCTAATACAGCTTTTCTGTCCTTTGGGAAAACTGCAACCATGtactgcattttcaaaagcaaagggaaaaacacacagagctgaACGTGTGAAACGTATCAATACTAGATTAGTTCTCAATGTATAAAGAGTATTCCTGCTGCACCTCCAGACTGGCAATTTCCCATTATCGTCAAAGGATGTCTGAATTTCAGCACAGATGAGGCCAGGAGAGCAGCTGCACAAAAGATTGCAGCAGGTCTGTTCCCCTCCATTAAGAAGCAACCCTGCCCTGGGCTAATTGTTCAGTAGTGTCACACTGCtgctcattttgcatttagtacAATTAAATTCTGTCACCAAGAATAAATAGAAAAGTTGctattgtgtttatataaaatgaagcaaatacattaaacagattCATTTCTTGACACTGCAGTGACCGATTTTAGGGAGACTGCTGCAAACCGCCTGCCCATCAAAGTCTCATCAGACCAACGTCGGCTTCAAATCTGATCACGACCCGCATCACTAGAATACAGCAGTACTGTAAATATGCACGTTGAATACCTTTTGCAATTAGAGGTATCAATTTCCTGTAAAAGCTTTCAGACATTGCACGTGTCAGCTGTTgctgaaatatataaacaccaCTTAACAGAAAATGGGCTTCCTGTTGGCAATTTCTACAGACTTTTCCTTTGCTGCAGTAAAGGACAGTGAAAAGTATTCCCATAtcattcacatttcatttgatGCACATGACCTCGTTGATCTCCAAGTCATGCCTAAAACGGACAGTGCTAGATTTGTTTAGTAATTCGTTCAAACATTTCCATGAAAAGTTGAAACCTCAGAGGCACAAGGGAGGCTACAGTCCAGGAGGTTCGATCACACTGATTTAGTTTCCGAACGTCAAAAATCACACGACCTTGAAAGAAACATACAGGTAACTATCTCACAGGTATAAAGGTctctttttacagttttaaagtcAACTCACAATCCAGAACAAAAACTCACATTTACCAGATTCAAACAAATTGCACCGTAACCAATGAGGACATTTACAATAGTCAAAACTACCAATATTTAGGACTTAAAACTGAGTTTTTCCACAAAGATGAGCTTTAGTGCCATTTTCAGCACTGCAAATTCAAAACCCAAGAAACTTAATTCCATTTTTGGACAGGTCTATGGAAAAGGCTGACAACCCCATGTAATCTGAACTCTTATTACTGCTGTGaggtttctttttaaagaactggaaaataaattatcattaacATAACTATAATTAGCAGGGGATATCTGCATTTAAACCAGTGTGCCATACACACTGTAAACTACAGTGTTGTGACCTTGGATGGAACATTAATCTATGCCTTTCTACTACTGTTCCTTATCATATCTTTTTAGAAAGACATCTTTCCTCCAATAAAGACAACTTTCATCTTTGTAGGAGATGCCAAGACATCCTGAAGAGTATGATTACAGATTGCAATGCATGCGTCGGCATGTGCCATCTTTAGAGAAAAACGACACGATTTAATTTCACCTACTCCTGCAACCCATTgtcaacaacataaaaacaaaacaaaaataaaacaactgtacGACACACTGGTTTGAAGCAAATTTCTGAACCGGAGAGACTTCTCGTTTTCAGGAGTGGCAACCAGTCAGTTTGCGTAGAAAGTGTCAAAAATGGAATTCACATTTCGGCTTGAACACAATTCAAAGCACTTACTttatacaacaaaaaacaacatcactCACAGACATCTAGGTCATATTCATGACAAAACTTGAAATCACAAGAAGAGAAAGCCTAGTGCACACAAGCCTCTGTGGTCATCAGGTTATTTCACAGAGGCTTCATTGAATAGTATCTTATGGAGAGGTCCAGTGGTTAAATAAAGAGAACCTCCGCACCAGTCAGCTCTGCCTTgccatattttgaaaaacattcgCCCTTAAAAACAATTATCTGAAAACTCAGGACTATGCTCAATAATACCCTTCACTCTGGAATACTtgattgaaaacagaaaaatacctttaattttgttaaagGCTTTTTTCAGCACAGTATGTTTCAGTCAAAaaactagatttaaaaaaacaaaacaaaaaaaactgtacacCTCAGATGCTTCAATGCATTGCAAAGCAGAAAATCTGAAGATGTGTCTGTCTTACAGCTTTTTACCATTTACTTATTTAGAGACACTGGAATACTCCATAAAGAAATACGGTCCAAACTGCCACCTGACAGCATCTCTAAAGATGCATCTCTACATTATGCATAGTACTGTTGTAACTCATATATATAGCTGCCTTAAAGTTGAAAAATTAGAACATGTATCTAATTAAATGCCACTGTTTTTATTCAAAGTTATCCTGAATACATctatattatacaaatgtataaaacgT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185893 lncRNA upstream 484662 2525191 ~ 2525421 (+) True G147739
TU185889 lncRNA upstream 531125 2478710 ~ 2478958 (+) True G147735
TU185838 lncRNA upstream 641638 2301487 ~ 2368445 (+) True G147689
TU185836 lncRNA upstream 651946 2291140 ~ 2358137 (+) True G147688
TU185834 lncRNA upstream 656025 2350041 ~ 2354058 (+) True G147687
TU185972 lncRNA downstream 5576 3020395 ~ 3021571 (+) True G147807
TU185973 lncRNA downstream 8119 3022938 ~ 3023268 (+) True G147808
TU185974 lncRNA downstream 10559 3025378 ~ 3025789 (+) True G147809
TU185979 lncRNA downstream 20200 3035019 ~ 3036346 (+) True G147814
TU186011 lncRNA downstream 121101 3135920 ~ 3139189 (+) True G147842
AMCG00000085 mRNA upstream 149899 2858153 ~ 2860184 (+) True AMCG00000085
AMCG00000088 mRNA upstream 169048 2839915 ~ 2841035 (+) True AMCG00000088
AMCG00000086 mRNA upstream 219596 2776667 ~ 2790487 (+) True AMCG00000086
AMCG00000074 mRNA upstream 402092 2572779 ~ 2607991 (+) True AMCG00000074
AMCG00000071 mRNA upstream 874185 2128584 ~ 2135898 (+) True AMCG00000071
AMCG00000075 mRNA downstream 61366 3076185 ~ 3107875 (+) True AMCG00000075
AMCG00000078 mRNA downstream 388540 3403359 ~ 3416557 (+) True AMCG00000078
AMCG00000079 mRNA downstream 428694 3443513 ~ 3464306 (+) True AMCG00000079
AMCG00000081 mRNA downstream 449544 3464363 ~ 3469964 (+) True AMCG00000081
AMCG00000082 mRNA downstream 508781 3523600 ~ 3536734 (+) True AMCG00000082
TU185878 other upstream 606111 2403730 ~ 2403972 (+) True G147726
TU185496 other upstream 1893133 1063085 ~ 1116950 (+) True G147416
TU185369 other upstream 2511572 449652 ~ 498511 (+) True G147311
TU185240 other upstream 2763078 240502 ~ 247005 (+) True AMCG00000032
TU185255 other upstream 2944794 64746 ~ 65289 (+) False AMCG00000025
TU186234 other downstream 678290 3693109 ~ 3695802 (+) False AMCG00000094
TU186257 other downstream 706166 3720985 ~ 3724316 (+) True AMCG00000093
TU186262 other downstream 745360 3760179 ~ 3760624 (+) True G148040
TU186772 other downstream 2420339 5435158 ~ 5435762 (+) False AMCG00000142
TU186901 other downstream 2866204 5881023 ~ 5888027 (+) True AMCG00000166

Expression Profile