RNA id: AMCG00002478


Basic Information

Item Value
RNA id AMCG00002478
length 435
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00002478
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16270456 ~ 16336719 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCAAACGTTTGGAACAGCAACCAATGTACCCTCAGTACACCTACTATTATCCTCATTATCTTCAGACCAAGCAGTCCTATGCTCCAGCTCTTCACCCCATGGCTCCCCCCAGCCccagcacaaacagcagcagcaacagcgcTGGCGAGCAGCTGAGTAAAACCAACCTGTACATCCGCGGCCTTCCCCCCGGCACCACTGACCAGGACCTCATCAAACTCTGCCAACCATTCATTCAGAAGGTCAAAATACAAAACCCAAAAGGGGGGATATCAGACAAAGGAGAGACATCCGTGATGATGGGGGAGAGGCCGCTGGGGGAACAAGCGCCAGCTATGAGCACAACCCTCAGCTTCTTACAGCCCAAACGCCAGCCTGCTGACAAGACAGCTGTagcacacactgcagcacttGCCCCTACTGATATTTAA

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154713 lncRNA upstream 475307 15794408 ~ 15795149 (+) True G123388
TU154711 lncRNA upstream 580493 15689601 ~ 15689963 (+) True G123386
TU154580 lncRNA upstream 930287 15262949 ~ 15340169 (+) False G123295
TU154579 lncRNA upstream 930287 15337588 ~ 15340169 (+) True G123295
TU154466 lncRNA upstream 1577680 14691981 ~ 14692776 (+) True G123197
TU154813 lncRNA downstream 149107 16485826 ~ 16489952 (+) True G123468
TU154876 lncRNA downstream 314823 16651542 ~ 16651964 (+) True G123525
TU154877 lncRNA downstream 316780 16653499 ~ 16654884 (+) True G123526
TU154926 lncRNA downstream 455381 16792100 ~ 16792799 (+) True G123568
TU155013 lncRNA downstream 644074 16980793 ~ 16985904 (+) False AMCG00002496
AMCG00002476 mRNA upstream 144634 16124380 ~ 16125822 (+) True AMCG00002476
AMCG00002471 mRNA upstream 297309 15970084 ~ 15973147 (+) True AMCG00002471
AMCG00002469 mRNA upstream 336022 15922805 ~ 15934434 (+) True AMCG00002469
AMCG00002468 mRNA upstream 417971 15851347 ~ 15852485 (+) True AMCG00002468
AMCG00002467 mRNA upstream 449432 15797974 ~ 15821024 (+) True AMCG00002467
AMCG00002479 mRNA downstream 6379 16343098 ~ 16459211 (+) True AMCG00002479
AMCG00002480 mRNA downstream 198928 16535647 ~ 16570427 (+) True AMCG00002480
AMCG00002482 mRNA downstream 284800 16621519 ~ 16651406 (+) True AMCG00002482
AMCG00002483 mRNA downstream 399965 16736684 ~ 16750596 (+) True AMCG00002483
AMCG00002484 mRNA downstream 417377 16754096 ~ 16769522 (+) True AMCG00002484
TU154081 other upstream 3140759 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 3208771 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 4129991 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 4434287 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 4576291 11688600 ~ 11694165 (+) True AMCG00002331
TU154987 other downstream 621442 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 1578717 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 2495295 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 2793684 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 3937370 20274089 ~ 20276255 (+) True AMCG00002573

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_00885996_00887374.mRNA True 495 mRNA 0.52 4 CI01000016 885996 ~ 887478 (+)