RNA id: TU2954



Basic Information


Item Value
RNA id TU2954
length 1217
RNA type TUCP
GC content 0.42
exon number 1
gene id G2440
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14418516 ~ 14419732 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCATAGCAGTGTGAAGCAATACTGTGAACTAGAGAAAGGTGTGCTCTTCTGCGTCTGACAGCTGGACAAAGGCCGTGCACAGTGCATCCAGcggaccaaaaacaaaaaacggcCTTTCAGAAATGTCTGAATTTCAGATGCTTCTAACCATTCCAGACCCACTTCTCAGGGAGGGCGCAGCTTTCCAAAGGGGTGTTTGTACTCAGGTGGTAATAAACCACATCGAAGGACTTTCATTAGGTCTCTTGCCAAGACACTCCTTCAACaatcatctttctttttctgcctCCGGGGAACAAAGCACATTATCAGAAGCCAAGGCCGTGAAAACCTGTTTTGATAATGACTTGAATTGTGCCTCTGAACAAGCAGCTACAAAACCAGATAGGACAGAAGACCTGGTAACACGTAACTTAACGGagaacaacttttttttttacagattattatttttttagcaaaTTACAGGAGTCCAGAGCTGAACAGTGAACAGAAAACTACTGCACACGCTTAAAGCTAAACAATGTCATGTAGTCAGtccttatttatttcagtgcaaaAGATCTCTGGTGCTGGTGGCGCCACATGCTGGCTGATATTGTTAGATAATAACTGAGGAGACTTCCATCAAAATAATTCACTGATGGCTTCAGTTGTGTCTGTAGAAACCCTGAGGTTCTCTCATGGGTTGATACTCACTGAGTGACCAAAGGAATGTGGTTGGTCTTAGTTCTTGCATTCTCCCCTTACCAAGACTGAAGGCCTGGTTACTAGTAGCGATGCATGCATTGGGCAGCTCAGATAGGGAAAGCAACAACACACTTAGTGCAGCAGCTGCTTTTAGCAAAGTCCACTGGAATAGAAAACTGAAGGAATTCAATTGAAACTGTCAAAATCATTCCAAAATACTTCCTGGTCTGCAGGTGCCAGGGTATGTAGGACACTGTCTAATTAGGGTATACAGTGACTTCACCAAAAGGATTGTGCTCAATAGCAACCACACAGATGATAACGAGTAATTTACTGGTCTGCTACCCCCTCAATCCATTGTAAAGTAAAGGTCAGTAACTGTAATGATGGTTGTTTGCCGGAGTTAACTATAATTGTCATTGAGCACAACTCTGGGCACCAAGCTTCACAGCTGAAATGAACTTACACACActatctacactcacctaaaggattattaggaacaccatactaatactgtgtttgNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2884 lncRNA upstream 339189 14079112 ~ 14079327 (+) True G2380
TU2832 lncRNA upstream 877362 13539972 ~ 13541154 (+) True G2336
TU2830 lncRNA upstream 903451 13514660 ~ 13515065 (+) True G2334
TU2829 lncRNA upstream 905518 13512600 ~ 13512998 (+) True G2333
TU2828 lncRNA upstream 905985 13512194 ~ 13512531 (+) True G2332
TU2960 lncRNA downstream 999 14420731 ~ 14421310 (+) True G2446
TU3032 lncRNA downstream 432020 14851752 ~ 14866698 (+) True AMCG00003690
TU3058 lncRNA downstream 586614 15006346 ~ 15030368 (+) True G2517
TU3118 lncRNA downstream 694897 15114629 ~ 15114837 (+) True G2563
TU3119 lncRNA downstream 695973 15115705 ~ 15116972 (+) True G2564
AMCG00003678 mRNA upstream 2433 14408429 ~ 14416083 (+) True AMCG00003678
AMCG00003680 mRNA upstream 29966 14385138 ~ 14388550 (+) True AMCG00003680
AMCG00003679 mRNA upstream 35924 14366316 ~ 14382592 (+) True AMCG00003679
AMCG00003674 mRNA upstream 82847 14329530 ~ 14335669 (+) True AMCG00003674
AMCG00003672 mRNA upstream 89831 14299567 ~ 14328685 (+) True AMCG00003672
AMCG00003683 mRNA downstream 120812 14540544 ~ 14548128 (+) True AMCG00003683
AMCG00003681 mRNA downstream 136258 14555990 ~ 14558193 (+) True AMCG00003681
AMCG00003682 mRNA downstream 144796 14564528 ~ 14580910 (+) True AMCG00003682
AMCG00003688 mRNA downstream 188254 14607986 ~ 14617192 (+) True AMCG00003688
AMCG00003690 mRNA downstream 433549 14853281 ~ 14866758 (+) False AMCG00003690
TU2754 other upstream 1261889 13155060 ~ 13156627 (+) False AMCG00003655
TU2685 other upstream 1375919 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 2841187 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 2927073 11490185 ~ 11491443 (+) False AMCG00003606
TU1883 other upstream 4637614 9777508 ~ 9780902 (+) True AMCG00003570
TU3283 other downstream 1615931 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 3262085 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 3718023 18137755 ~ 18142633 (+) True AMCG00003779
TU3794 other downstream 3726928 18146660 ~ 18152314 (+) True G3108
TU4227 other downstream 4948461 19368193 ~ 19369266 (+) False AMCG00003828

Expression Profile