RNA id: AMCG00007051


Basic Information

Item Value
RNA id AMCG00007051
length 753
RNA type mRNA
GC content 0.47
exon number 1
gene id AMCG00007051
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 1755590 ~ 1756342 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTCAAACACAGGCAAAACCTGAAGCCAAAACCATTATGATAAGTGACTTCAAAGGCATGCTGAAGAAAACAAGCCAAACCGACTTCACACAGCACTTCAGCGACAGCGTCAAGCACGCCTCAAACAGAACCAGAGAGTACCTCTTGTTTAAGGATCCAGAGAACAAATTCCACCCCAGTGACACTGTCCTGAATGAAATCTTCCTGATGACGTACATAAGTCGCAGCGTTCACCATCAGCTGACCGAAACCTTCAACTGCACCATGATGACCAAAAAGCAAGAGATCCTACTGGGAGCCGACTGGGTTTGGGCTGTCATAGACAAGCCCAGCAAGAACCCGAAGATGCAGATTGCAGTGCAGGTCTTTCACCTGTCCGAGGAAGAGGGCGAGGCCCCAAAAAGGGATCATGTGGAGATGTTATCTGAGGCTATGGAAATGGCCAAGATGGAGTCTGCTGACAAAACCAAGCCAGAGAAGATGATTGAATTTTGCTCTTCTATTGGCAAGGATTGTTATGCGCTCTTCCTTTTCTTCGGTCGTAAAAATGACCCAGCCAACATTTACGGGGTACTTAGCAACAACTTCCAGGCTGCCTTCGGGAAAGGTGCTAAAATCGACCAGGCCTTCATTGAGAATTTCTTCAAGGGGTCTAAGAACTTTATCACACCAGCCAAGATGCTGCAGACCATTGTcaacaaagaaaagcagcatGAAGAGCCCCTTACAATGGTCATCAAGTTTACTTAA

Function

GO:

id name namespace
GO:0030182 neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0048699 generation of neurons biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25945 lncRNA downstream 25111 1676304 ~ 1730479 (-) True G20795
TU25954 lncRNA downstream 28423 1722556 ~ 1727167 (-) True G20802
TU25839 lncRNA downstream 374480 1378456 ~ 1381110 (-) True G20726
TU25840 lncRNA downstream 374480 1380510 ~ 1381110 (-) False G20726
TU25778 lncRNA downstream 763591 990555 ~ 991999 (-) True G20676
TU26063 lncRNA upstream 415562 2171904 ~ 2172483 (-) True G20870
TU26116 lncRNA upstream 443711 2200053 ~ 2254560 (-) True G20908
TU26117 lncRNA upstream 443858 2200200 ~ 2308118 (-) False G20908
TU26123 lncRNA upstream 530482 2286824 ~ 2288618 (-) True G20914
TU26162 lncRNA upstream 670817 2427159 ~ 2427421 (-) True G20947
AMCG00007047 mRNA downstream 57757 1659504 ~ 1697833 (-) True AMCG00007047
AMCG00007046 mRNA downstream 102278 1637115 ~ 1653312 (-) True AMCG00007046
AMCG00007044 mRNA downstream 128931 1599935 ~ 1626659 (-) True AMCG00007044
AMCG00007045 mRNA downstream 185246 1532459 ~ 1570344 (-) True AMCG00007045
AMCG00007043 mRNA downstream 237181 1504301 ~ 1518409 (-) True AMCG00007043
AMCG00007054 mRNA upstream 3152 1759494 ~ 1794639 (-) True AMCG00007054
AMCG00007053 mRNA upstream 65609 1821951 ~ 1824537 (-) True AMCG00007053
AMCG00007052 mRNA upstream 88313 1844655 ~ 1862173 (-) True AMCG00007052
AMCG00007060 mRNA upstream 158960 1915302 ~ 1924883 (-) True AMCG00007060
AMCG00007059 mRNA upstream 386333 2142675 ~ 2196855 (-) True AMCG00007059
TU25725 other downstream 802528 952236 ~ 953062 (-) True G20630
TU25697 other downstream 907301 845929 ~ 848289 (-) False G20609
TU26054 other upstream 388374 2144716 ~ 2145815 (-) False AMCG00007059
TU26061 other upstream 410968 2167310 ~ 2170570 (-) False AMCG00007059
TU26783 other upstream 3285317 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 3286178 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 3300445 5056787 ~ 5057406 (-) True G21429

Expression Profile