RNA id: AMCG00008429



Basic Information


Item Value
RNA id AMCG00008429
length 1017
RNA type mRNA
GC content 0.61
exon number 5
gene id AMCG00008429
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 947657 ~ 950842 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGACCTCTGAGGACGATCAGCACAATAGCAGGCAGAGTCCCACGCAGGGCAGTGCCGGGCGGTGCTGTGCGGTGAGTGTGGGTGTGGTGGACAGAACGAACGGGCTCTCTGTGTATAAATACCCGGGTGCCCCGATGCCCAGAACACTCCCAGCGCAGCCTCTCagcacctgtctgtctgtcgctCTCTCTGTTGCTCTGCCTGTTTGCGTTGGCCTCGTGAAGATGGCGTTGTGGTTGCTGGCCGCTCTGTGCCTGGTGCTCGCGGTGCCCGGCGCGGACGCCAGGGCGTTTAAGAGGTGCGAGTTTGCTGCCCTGCTGGAGGAACAGATTCACAAGATGAAGTCCAACACCAGCGTCCCTGTAAAACTGGACCCCAAGCCTTTCCTGGCTACCGTGGTGTGCATGGCAGAGAAGGGCGCGGGGCTGAACAGCAGCTCAGTCACACAGTACAGCACCGCCCCCCCCAAGCCGGCAGGCACCAAGGGGAGAGAGGAAAACGGAGGAATAAGTGGGAGGAAGAATGGGAAGCAGGATCAGAGAAAACAGAGGAAAAAGAGATCGTGGATGGACAAGAagaaggggaaggggagggcAAGGAGGAGCAGGGTGGGGCAGGCGCCCGGCGGGCCGCTGGAAGCcctgaaggaggagaagaagaagggaGAAGAAGAGAAGCCGATCAAGCAGCTGCTTTCGCTGGACAGAGGGAAGATGATGGACGGGTCGCCGAAAAAGAGGTCAGCCCCGGTTCCTGGGCCGAAGCTGGGCCTGGGTCTGCTGCAGCTGCCCTCTGTGGTGGTCTGCTCCTCTCCGGACCAGCCGGGCCAGAACCTGTGTGGCTTGAACTGCACCAAGCTGATGGACGATGACATCACCGATGACATCACCTGCGCCTTCAGAGTGATGCAGGAACTGGGCCTGGGGCCTTCCGCTCTGGCCCAGGAGTTCGACAAGGTGGTGAAGACGCTGGGGTGTGACAACGCCAAGCCCTCCGTCTACCTGACCAAGTGCTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU61335 lncRNA upstream 11376 933145 ~ 936281 (+) True G49069
TU61332 lncRNA upstream 16830 929706 ~ 930827 (+) True G49066
TU61233 lncRNA upstream 163676 765871 ~ 783981 (+) False G48996
TU61232 lncRNA upstream 163676 782180 ~ 783981 (+) True G48996
TU61185 lncRNA upstream 197055 748598 ~ 750602 (+) True G48961
TU61376 lncRNA downstream 107719 1058561 ~ 1107290 (+) True G49101
TU61377 lncRNA downstream 112707 1063549 ~ 1068033 (+) True G49102
TU61371 lncRNA downstream 129179 1080021 ~ 1117780 (+) True G49097
TU61383 lncRNA downstream 135728 1086570 ~ 1087158 (+) True G49107
TU61386 lncRNA downstream 141879 1092721 ~ 1096634 (+) True G49110
AMCG00008419 mRNA upstream 104522 822678 ~ 843135 (+) True AMCG00008419
AMCG00008417 mRNA upstream 134297 806759 ~ 813360 (+) True AMCG00008417
AMCG00008418 mRNA upstream 148594 785426 ~ 799063 (+) True AMCG00008418
AMCG00008411 mRNA upstream 169226 775391 ~ 778431 (+) True AMCG00008411
AMCG00008412 mRNA upstream 227783 716095 ~ 719874 (+) True AMCG00008412
AMCG00008423 mRNA downstream 15038 965880 ~ 968004 (+) False AMCG00008423
AMCG00008424 mRNA downstream 25385 976227 ~ 983656 (+) True AMCG00008424
AMCG00008431 mRNA downstream 35135 985977 ~ 994819 (+) True AMCG00008431
AMCG00008430 mRNA downstream 59553 1010395 ~ 1033311 (+) True AMCG00008430
AMCG00008432 mRNA downstream 101753 1052595 ~ 1055755 (+) True AMCG00008432
TU61256 other upstream 68144 876554 ~ 879513 (+) True G49013
TU61033 other upstream 359211 587280 ~ 588446 (+) True G48846
TU60995 other upstream 395751 550281 ~ 551906 (+) True G48811
TU60768 other upstream 780159 166958 ~ 167498 (+) False AMCG00008375
TU60757 other upstream 854777 87317 ~ 92880 (+) False AMCG00008369
TU61359 other downstream 14996 965838 ~ 968583 (+) True AMCG00008423
TU61499 other downstream 371969 1322811 ~ 1324269 (+) True G49208
TU61614 other downstream 979812 1930654 ~ 1936502 (+) True G49298
TU61588 other downstream 1141119 2091961 ~ 2105573 (+) False AMCG00008475
TU61627 other downstream 1176873 2127715 ~ 2143310 (+) True AMCG00008476

Expression Profile