RNA id: TU61232


Basic Information

Item Value
RNA id TU61232
length 1467
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G48996
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 765871 ~ 783981 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCGATTCAGGACCACCGCACTACGTCTCGTCCATCTAGCGGAAAGGCGGCGTCCGCAGTGCCGAGTAGGCGAGAGGACGGGCCGCACAATCCGCCTGAAATAATGTCTCTGATCCAGTTCGAGACACCTTCACACCACATCGCTATAAACGAATGTGCGACTGGCCCCACGGGCACTGAGGAGTTCTGGCACAGTGCTGCTAACCGACGAGTTGAAACTGCGGACCTGGTTTGGTGGAGGAATGGTGTGACCGGGCATCGGGGGGGGttctggtttctcatatgtaaatacaaattcttGGGAGAGAACGATTGCATTAAAATGGCTTAAAACATCAATTTCAACTGAATCAATAAatcataacatttgtttttatttaattgtgtttttttgcaaaacaattaattatcaCAGTTGgagaacataaaacaacaaactggCACcctgacagacagaaagacacagacacacacacactcactcacagcgCCACAGAAAGCTGATTCGTCTTAAAAGGCGACAACGTTTATCAGAGATAAGAAAATGCAACTGCAATGCTCTCTGCTTTGATAGACAGTGATTTGGTTACAAACAATCaggatttaaacaaaacaaacaaaaaaacactgtaccTCCTATTTCAGACTGTGACCCTGTAgtatgtgtacacacacacacaccaattcaaatatacataaatagcTAAAGTCCACAGTCCTCTGGTAAGAAGGGCTTTTCTGGGCTGTGCTAGGACGGCTGCGGGACACGCTttcctgcagagacagagagaaacacagagacaaacagagacacagagacacagagagacgcagagacacagaagcagaaacacagagagacgcaGAAAGACAGAGTTATTAATGTCAATCTATCCTCAGCCTCAAACAGTGGAAAATGCATCTGTGATgtgaatgcattattttattattcaaatgatcgttgttattattgttaatatttgcTATTATTGCTACCGCCTCCCTCCCATTTGTTGTGGCATTAATGGCATGTTGTGGAGGTgcattgcatgtgtgtgtatgtgtttgtttttctcgcGTGTGCGGCGTGTTGTCTCACCCAGCGCCGTTATGTCCACGGTCTCGGCACACGCCAGGAAGCGCGACACGTGCGCCGAGCAGCGGGAGGCAGAGTCCTGGTTGTCACGTAGACAGCGCTCAAATTCCGAGAACTGGGAAGAGCACTGGGAGCGGATCAACTGGATGTGAGGACGTGCACTGCGCCACCTTCATCTTCAGCTGCTGGCACTCCCGCTGCCATGAGGATGGGTTGGCAGCCACACACATCCCATAATCCTCCATCTCCTTCCGACAAAACTCAGCCGTGATCTCCATGGCAGCCTGCCTATGGGGGGGGACATTGTAAAGGTGAAACACAAACTACAATGCATATAGTACATactccaggtgtgcagtgtgtgcagtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61185 lncRNA upstream 31578 748598 ~ 750602 (+) True G48961
TU61166 lncRNA upstream 86067 694468 ~ 696113 (+) True G48947
TU61136 lncRNA upstream 91143 640876 ~ 691037 (+) False G48921
TU61135 lncRNA upstream 140276 640876 ~ 641904 (+) True G48921
TU61128 lncRNA upstream 151867 629884 ~ 630313 (+) False G48915
TU61332 lncRNA downstream 145725 929706 ~ 930827 (+) True G49066
TU61335 lncRNA downstream 149164 933145 ~ 936281 (+) True G49069
TU61376 lncRNA downstream 274580 1058561 ~ 1107290 (+) True G49101
TU61377 lncRNA downstream 279568 1063549 ~ 1068033 (+) True G49102
TU61371 lncRNA downstream 296040 1080021 ~ 1117780 (+) True G49097
AMCG00008411 mRNA upstream 3749 775391 ~ 778431 (+) True AMCG00008411
AMCG00008412 mRNA upstream 62306 716095 ~ 719874 (+) True AMCG00008412
AMCG00008410 mRNA upstream 69561 709248 ~ 712619 (+) True AMCG00008410
AMCG00008403 mRNA upstream 152743 609033 ~ 629437 (+) True AMCG00008403
AMCG00008402 mRNA upstream 241136 540113 ~ 541044 (+) True AMCG00008402
AMCG00008418 mRNA downstream 1445 785426 ~ 799063 (+) True AMCG00008418
AMCG00008417 mRNA downstream 22778 806759 ~ 813360 (+) True AMCG00008417
AMCG00008419 mRNA downstream 38697 822678 ~ 843135 (+) True AMCG00008419
AMCG00008429 mRNA downstream 163676 947657 ~ 950842 (+) True AMCG00008429
AMCG00008423 mRNA downstream 181899 965880 ~ 968004 (+) False AMCG00008423
TU61033 other upstream 193734 587280 ~ 588446 (+) True G48846
TU60995 other upstream 230274 550281 ~ 551906 (+) True G48811
TU60768 other upstream 614682 166958 ~ 167498 (+) False AMCG00008375
TU60757 other upstream 689300 87317 ~ 92880 (+) False AMCG00008369
TU61256 other downstream 92573 876554 ~ 879513 (+) True G49013
TU61359 other downstream 181857 965838 ~ 968583 (+) True AMCG00008423
TU61499 other downstream 538830 1322811 ~ 1324269 (+) True G49208
TU61614 other downstream 1146673 1930654 ~ 1936502 (+) True G49298
TU61588 other downstream 1307980 2091961 ~ 2105573 (+) False AMCG00008475

Expression Profile