RNA id: AMCG00009042


Basic Information

Item Value
RNA id AMCG00009042
length 2899
RNA type mRNA
GC content 0.38
exon number 4
gene id AMCG00009042
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 22430340 ~ 22441467 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCGAGCATGGCTGACTGACCCATCTCTCCTAGGTCTTTCCAGCGGCCGGCTCAGAGTTCCTCGGACAATTTACCAGAAGATCCGGGAGTACGACCTTCTAGACAAGAGGAAGAGAGTGACAGCACtgaaggcaggagaggaccggGCTATCCTGCTGGGACTCACCATGATAGTGTTCTCCGTGATGATGTACTTCCTCCTGGGTATCACCATGGTGCGCTCCTACACAGACAGTGTCTGGACAGATGAGTCTAACTGCACTGTGCTCAACTCCAGCATTGTGTCCGAGATTAACTGCACATACAGCTGTGGTTCGGACTGCTGGAAAGGGTCAAAGTATCCTTGCCTGCAGGTGTTCGTTAGCCTCAATTCCTCTGGGAAGATTTTTCGCCTTTCCCACAATGAGGAGACACATGGCCTGAACCCTGAGTGTTTTTACGTTCCCAAATGCCGAAAGGACTACACTGTAGCACGCACTATAATAATGAACATTTCGGAGCGCCTGAAGTCACACCAGCAGTTCCCCTGCTACTACGACCCTGGAGAGAGGCAGGACATGGTGCTGCTGACCAGACTATATGGCCAGGGGGCAATCTTCCACTCACTCTTCTGGCCCTCTTGCATGCTGGTAGGAGGCACTCTCATCATCGCCATGGTGAAGCTCACTCAGTACCTGTCCATACTTTGTGAACAgatcaataaaatcaaaaggtgaaaggaaaaaataaggcataataaacaaaatcaatgaatacattcatttaaaaaacaaataaatgaaaagataaGATGCTCTTCACCAAAGAACCTTAAGGATTGACatggtttttgtttggttttgtgttttgtttcctttttttggtcTAAAATTATATGTTGCCAACTTCCTCCTTCCTCCATCAAGAAAAGGTTAAAagttatgattttttaatttagactCTCTTCAGTTCTGACAACATGCTCTCATTACACGGGGACTCTTCAAGGAAGGCCAAGACAGAACAGAACAGGACTGAAATTCTACTGCTGAATATACAAGAAAAAGCTATCTAACAAGgcaacaaacattttaaagactCTGACTTGTGATCAGCATtatcttctgttttatttattttttaagtaagcAACTGTTGTATTATGCCATGTAACCTTCCTCTGAAAGCAAATCTTACAGAAAGTTAGTGACAGGCAATGTTTCTGACCTATCATTGATCACAGGTTGCCACAATAATCTATCCACGTTCTGTTAACAGGACACAACGTTTTTGTTCAGGGTGGTCTACAAAGACTTTGATACCAAAGTATTCAGAAACTGTCTTTGAGTCACATGGTAGGAAATTAACATGTCAAGCTCCATCATGCAGGTTCAATCCCATTAAACACAGTGATATAAACGGGTTACTATTTTGCACTGGGAGGTATGCACTTTGTAGCTCTTCATTTTAAGAGGCTGGAAATGTCAACTTTACATGAAAGACGAAGTATGAATACACACTTTGTCTACACACTCCTAAAACAGTTACAAATCCCAACAGTCAGCACTGCCACCATAAAGGCCTGTTAACAAATAACCACTACCACAACCATTACTGACAAAGTATGAAAACTGGAATGTTGACAAATTTCCAGCACCCATCACTAAAGTATTACGGATAATTAGGTCTAATTCTTATCCCTACCCACAAAGAAGTGATTAAAACACTTGATTCTATAATTTGTTTCCCCACTATAAAATGCAGGTAAAGACAATTATGTGTTAATATACCCTGTGTTTCTGAAGCACAACATGAACTGCAACAGAGCAGTACAgcttattaatacaattaaaaagtcacTGTAATTGACATTTGTTTGTCTCAGTTTAATGTGAAACAgtacatgtttttcattctaCCAAATcatacacattacatttacGTCATCTGCTCCATTTTCACAAGTTACTGAATTAATtccaaagtatttatattttccaaaatgttcaTACAGATATATGAAATTATGACATGCTgcaataaaattattatttttttgttcttcattccATTTGATATACTGATGTACTTCACTTTGACTAAATTTCCAAGTGATGACAGCTTCCTGTTTGCTATCAGTCTCAAACCCCCcaaccacatacacacacacacctacctaACTGGAAGCTGCTGTCAAGTAATTGGGCTTGCAATGTGTTGCTGGAGCCTGGGTCTAAGTCTTGATTTTATCCCAGTCCAACTCTCTTGAACTTAGGTGACCGGGGTTATAACCACGGTAGCTTATCTGTGAAATAAATCCACCTAGTGACTTACTTTTATACTGATGCTCAATATATGAATACTtatgataaacaaaaataaagatatttgtattaaaatgtgttaatgtttcTAAAGACgtgcaatgttatttttattatttggtgttttgatttgtattttcttatggATCAAACAAGTGAAATGTCTTTCATGAAAATTAACATTACCCATTATTGTATGtcctcaaaacaaaaatgtatttaaagccaGAACCAGTAGTACAAAACTAGTTACCTACAAATGCTGTCTTTCCAGTGTTAGTTCAGGGgacatttttacaaaatcaaTGTAAGCCAAACAAGCATCATTAGATTGTTTTAAGTGCAAGGTTTGAAATGTAATGGGTTTCCCAAACACTGCTGTTAGTTAAGACTTTGATGAATAGCATCGTGAGTTCATGAGTGGTCTGGTGCAATCATACGAAAGTGTATcgtcagagagaaaaaaatagtgcattaacattgtgttatttcacagtaattattacattattacatattacatatgaGATAACATTGCATTATGTTGCaataatgaatgcattattaTGAATAACTTTGTCCTGAAATCAAC

Function

GO: NA

KEGG:

id description
K04938 KCNMB2; potassium large conductance calcium-activated channel subfamily M beta member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67496 lncRNA upstream 281914 22147871 ~ 22148426 (+) True G54000
TU67490 lncRNA upstream 324937 22105190 ~ 22105403 (+) True G53995
TU67487 lncRNA upstream 386285 22043544 ~ 22044055 (+) True G53992
TU67484 lncRNA upstream 399906 22030141 ~ 22030434 (+) True G53989
TU67483 lncRNA upstream 400775 22029225 ~ 22029565 (+) True G53988
TU67530 lncRNA downstream 78399 22519866 ~ 22528083 (+) True G54030
TU67532 lncRNA downstream 79589 22521056 ~ 22542762 (+) True G54031
TU67534 lncRNA downstream 93126 22534593 ~ 22603477 (+) True G54032
TU67571 lncRNA downstream 248471 22689938 ~ 22691180 (+) True G54063
TU67632 lncRNA downstream 265674 22707141 ~ 22707844 (+) True G54101
AMCG00009038 mRNA upstream 1343315 20997898 ~ 21087025 (+) True AMCG00009038
AMCG00009035 mRNA upstream 1737953 20686145 ~ 20692387 (+) True AMCG00009035
AMCG00009034 mRNA upstream 1969326 20456457 ~ 20461014 (+) True AMCG00009034
AMCG00009033 mRNA upstream 2035521 20376795 ~ 20394819 (+) False AMCG00009033
AMCG00009032 mRNA upstream 2166474 20263075 ~ 20263866 (+) True AMCG00009032
AMCG00009043 mRNA downstream 171885 22613352 ~ 22631352 (+) True AMCG00009043
AMCG00009049 mRNA downstream 191250 22632717 ~ 22648476 (+) True AMCG00009049
AMCG00009050 mRNA downstream 228417 22669884 ~ 22686612 (+) True AMCG00009050
AMCG00009052 mRNA downstream 262719 22704186 ~ 22705397 (+) True AMCG00009052
AMCG00009053 mRNA downstream 409524 22850991 ~ 22854494 (+) True AMCG00009053
TU67408 other upstream 1136439 21292241 ~ 21293901 (+) True G53917
TU67406 other upstream 1154986 21274611 ~ 21275354 (+) True G53915
TU67402 other upstream 1261765 21168231 ~ 21168575 (+) True G53911
TU66948 other upstream 3876380 18550772 ~ 18553960 (+) True G53520
TU66780 other upstream 4510287 17917666 ~ 17920053 (+) False AMCG00009009
TU67814 other downstream 1441850 23883317 ~ 23975906 (+) True G54263
TU68049 other downstream 2371151 24812618 ~ 24816534 (+) True AMCG00009085
TU68059 other downstream 2473562 24915029 ~ 24917863 (+) False AMCG00009088
TU68288 other downstream 3143425 25584892 ~ 25587610 (+) False AMCG00009108
TU68775 other downstream 5172116 27613583 ~ 27617378 (+) False AMCG00009164

Expression Profile