RNA id: AMCG00009253


Basic Information

Item Value
RNA id AMCG00009253
length 2521
RNA type mRNA
GC content 0.43
exon number 2
gene id AMCG00009253
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30544153 ~ 30547821 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaacaaacagaacaagaaaaaaaaaaaaaaaaaaaacacatctgacaCTTTTTTAATGGCCAGCCTGTGTTTAAATACTGGCTCTTCAACTGCGGACGTGTCTGCCCGCCTCCACATTGTGGCCAATTACTGATCTATCAGCGCCCCGGCACAGCTGGTCCCCCCGGGTGCTGCTGGTCATTCATTTCAGATGACTGAGTTTACAGTGTAAGCAGGATGTCGGCTACATACTAAATAACcggtcaaatacattttctgctggGCGTTTTGCTCGGTGAGTATTTGAAATCAGAGATGGCAGATCAGAAGGATTCACCTGGAGACCCACAGCCGCTGGAAGAGGCAGAGTTCCTGCGAGTTTTGGCCGAGATCGGGGGTAAAGAGCGCATTTTCCTGGTGACCGACGCGTATGAGGGCGAAAGCGGCAAACAGCCCTGCGTGTTTACAGAGTTTTTAAAGGACGTGTTTCATGCCGCTTGCGTGGATACACccagcagtagcagcagtgCGACGCAGGGCGCTGGAGATGCAAACGCCTCGACTCACCACAACGGCACGGCTAGTTTTCCAAGCCGGAGCGACGAAAGGAAAAGTGGAGACGAAAACGAGCCAGGGAGCCACTGTGCGGGTAACCGTGCACCCCACACACCGTGGACCCCAAAGCCAAAGGCCGAACCATCTCCAGCTGGGAGGCCGGGGGAATTGGATGACCGGCCTCCACAAGGGAGAAGGGAGCACCCGGCAACCAGCAAGACGTGTCCTGCGGGAGAGCGGCCCATAAACTTTGCGCTCATAGTATTTCTATTCAGACACGAGTTTGTGAATAGCAAGGGGAACAAAATGCGCCTGAAAGAGATCCTGAAGGACGTCCGAGGTCGCAGCCGGGGAGCTGGTGAGCGGCCGGCGGTGCTCGGGCTGCTCCACGCCAGTGCCGAGAGCGGAGAGACCCACCAATCCGTCCGGGATCTGGATCACATGTTGCGGTCGGTGTTCAGAAAGCAGCCTCGGGAGTCGGTGTGGGTCGGCCCCTTCATACCCAACAACACAGACGGGACGCTGGAGATCAAGAGAAATCTGTGCAAGGCTCTGCAAGCCTCCCTTTGTACAGATAAACCCCAAAGTAAGGAAGAAGGAATCCCACTGAAGACCGTCTCCATCTCTGATCTCCAACAGGTTGAATGCAGAGCCAACAGACATGAGAGCCAGACTTAAACATCTCCTAGGCAACCACTAATGCCAGCACCCTTCAGGATCCAGCATGTACAAGGATACTTCCAGACCCTAATTAAATGTGACGTGACTGGAACCTGTGATTTAATAATTTGCACAATTGAACATATTTGAATACTAGTGAAATGCCGAGCTGGTGAAAGAGACCCTGTTACGTACAGTAACAAAGACTAAAGAACTGCTCCAGTATCTCAAATAGTAACTTATCCTGACCCTTCTTCTGTGATCACACAGGCCTGTGCGCACTGAGGACTTTAAAAGGAGATACTTTAAGTACTGGAAAACGTCTAAAATTTCCAAAATCTCAGAGCCCCTTCACAAGCATATATCTGCAATAGATGCACCTTACTGTATCCCTCTGTAATCTGTCTCAGTatcaatatacagtattatGAATCCACTATGAACTTATATGATGCCATGTTGATATTATAACATGTGCCAGAGGTTGAgaactatatacaaatatgctGACAAACTTCCGGTAGAGAAATCTAGatctggattaaatcaaagcttaGATCCAATCTGCTAGCCTGTAATTCCTTCATTTGGCAGAAGTTTCAAGTTTTCTAAtcttatttgttaaattattgcTTTGCAGTGATAACCAATTATAATTGCATCTAATTTACTGTTGaggtgtaatttatttatagtgcTTCTGGTATCTGAACATATCCGattagaagaaaaatgtaactaTGTAACAACTGTCAGTGTCTTTCTGGTGATGTTCAGAGTTGTGGAAGATTGATTCAACTCTAAGAGAGTTTACAATGATTTCTGCTAGTAAGTAATAATCCAGATCTTTAGTCAGATCAGTGTATTGGTACATAATGTtcaggattattttttttattattattttttttatatcattgGATGTATTGcttctatttttaaagaaagttgtTTTATACTTACACCTTTTACATAATTGTTGTATTGCTAACTATAAATTGCTATAAACATTGAAGCTTAAGCCCCAAATCAGTGATCAGCTAGTAAGCATGATGGAAAGCAATGAtgaaaaaccaaaacattgaaagtgcaaatctacTCTTTTGAAGTGacaacattttgaattaatcttGTGTATAATGTTTTCTAATTCATAGAATTACTGCTAtgttacacattattttattcatgtgcTAATCTTACAAAATAGCAGTTTTGGTTATCAAATAGTTTAGtctactttaatattttttaatctgtgtaaaactgttttaatatgtGTTACAAAATGCTGCtatttgtcttatttaatttgattaaatttcta

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69654 lncRNA downstream 52173 30491238 ~ 30491980 (-) True G55722
TU69634 lncRNA downstream 60780 30480779 ~ 30483373 (-) True G55703
TU69564 lncRNA downstream 307758 30236159 ~ 30236395 (-) True G55648
TU69515 lncRNA downstream 553343 29989899 ~ 29990810 (-) False AMCG00009235
TU69510 lncRNA downstream 567884 29975629 ~ 29976269 (-) True G55610
TU69697 lncRNA upstream 105091 30652912 ~ 30655021 (-) True G55760
TU69824 lncRNA upstream 261755 30809576 ~ 30816091 (-) True G55861
TU69967 lncRNA upstream 1367347 31915168 ~ 31915373 (-) True G55975
TU69990 lncRNA upstream 1402601 31950422 ~ 31950673 (-) True G55991
TU70018 lncRNA upstream 1450256 31998077 ~ 32031970 (-) True G56012
AMCG00009254 mRNA downstream 1858 30536850 ~ 30542295 (-) True AMCG00009254
AMCG00009255 mRNA downstream 28377 30493660 ~ 30515776 (-) True AMCG00009255
AMCG00009241 mRNA downstream 287654 30250054 ~ 30256499 (-) False AMCG00009241
AMCG00009240 mRNA downstream 299657 30236908 ~ 30244496 (-) True AMCG00009240
AMCG00009244 mRNA downstream 358502 30181081 ~ 30185651 (-) True AMCG00009244
AMCG00009262 mRNA upstream 13927 30561748 ~ 30567694 (-) True AMCG00009262
AMCG00009265 mRNA upstream 51653 30599474 ~ 30602845 (-) True AMCG00009265
AMCG00009268 mRNA upstream 103826 30651647 ~ 30652128 (-) True AMCG00009268
AMCG00009266 mRNA upstream 145878 30693699 ~ 30696595 (-) True AMCG00009266
AMCG00009267 mRNA upstream 253924 30801745 ~ 30803630 (-) True AMCG00009267
TU69579 other downstream 289670 30249871 ~ 30254483 (-) True AMCG00009241
TU69394 other downstream 873816 29660960 ~ 29670337 (-) True AMCG00009229
TU69243 other downstream 1481123 29058284 ~ 29063030 (-) False AMCG00009215
TU68783 other downstream 2926064 27613598 ~ 27618089 (-) True AMCG00009165
TU68523 other downstream 3747499 26793541 ~ 26796654 (-) True G54821
TU69693 other upstream 54758 30602579 ~ 30657612 (-) False AMCG00009265
TU69850 other upstream 386743 30934564 ~ 30937251 (-) True G55878
TU69860 other upstream 396546 30944367 ~ 30947211 (-) True G55881
TU69861 other upstream 425132 30972953 ~ 30985995 (-) True AMCG00009269
TU69876 other upstream 617190 31165011 ~ 31184966 (-) True AMCG00009275

Expression Profile