RNA id: AMCG00010877


Basic Information

Item Value
RNA id AMCG00010877
length 858
RNA type mRNA
GC content 0.62
exon number 6
gene id AMCG00010877
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3103974 ~ 3107204 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAACGGACGCGAACAAGCCTCACGGGTCTACCCGCAGCGTGGTGAGGAGGATCGGCTCCACGCTGCCCCTTAAGCCCTGCCCCAGAGCCTGTTTCCAGGCTCTGCCAGGGCTGCCACCTCTGCGCCCCACTGATGGTCCAATGGTGCCCACACTAGCAGACATTGCCTGGATCGCTGCTGACGAGGAGGAGACCTACGCCAGGGTGAGGAGTGACAGCCGCCCGTTGAGACATGAGTGGCGTCCCACGCCCCTGCTGGTCCTCCACAGGAACTCCTCTGTGCCCAACTTCAGACGGGAGGGCAAGAAGGTGGAGGGGCTGAAGAAACCAGGGCAGACTGCTCTGAACAGGACCACGGCCCTGCAGGACGAGCTGAGCCGGTTGCGCTCCCAGATTGCCAGGATAGTGGCAACAGATACAGGGTCCAATCCTTTGACGCCGGACCTCCTGTCCCCCGATGACACCAGCCTGAGCTTCTCCATGGCTCCCTTCGAGACGGCGTACCAGCCCACCGCCTCCTTCGTGATCAGTGACctgacggaggaggaggaggtgggggagcTGGAGCCGGACCCCCCCGGACTGTCCATGACCGCCTCTGCCACCTTTGACCTGGACCGGCCCGGCATGGACTGccaggagcaggaggaggacaCCATCTCGCTCTCCAAATCCACCAGCTTCGCCGACGTCATGGACATCCTCAAGGACATGAACCGCATGAAGATGAGCAAGGACAGGTACTCCCGCGGCTGCACCTCCCTGCGAGATGAGGACTCCGCCTCCCTGATCTCTGAGGCCCTGAGGAAGAAGTTCACTCTGAGGGACGAGGACGTCAGCATGAAGGAAAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128445 lncRNA downstream 112726 2990647 ~ 2991248 (-) True G102834
TU128418 lncRNA downstream 148999 2954760 ~ 2954975 (-) True G102816
TU128365 lncRNA downstream 270791 2789470 ~ 2833183 (-) True G102785
TU128289 lncRNA downstream 428838 2674563 ~ 2675136 (-) True G102725
TU128213 lncRNA downstream 615557 2481897 ~ 2488417 (-) True AMCG00010843
TU128510 lncRNA upstream 38060 3145264 ~ 3145687 (-) True G102887
TU128511 lncRNA upstream 52633 3159837 ~ 3160036 (-) True G102888
TU128512 lncRNA upstream 53379 3160583 ~ 3160897 (-) True G102889
TU128513 lncRNA upstream 53893 3161097 ~ 3161512 (-) True G102890
TU128569 lncRNA upstream 161338 3268542 ~ 3269769 (-) True G102920
AMCG00010872 mRNA downstream 59884 3034347 ~ 3044090 (-) True AMCG00010872
AMCG00010871 mRNA downstream 72412 3012593 ~ 3031562 (-) True AMCG00010871
AMCG00010873 mRNA downstream 119902 2976456 ~ 2984072 (-) True AMCG00010873
AMCG00010868 mRNA downstream 132959 2959275 ~ 2971015 (-) True AMCG00010868
AMCG00010867 mRNA downstream 158463 2944195 ~ 2945511 (-) True AMCG00010867
AMCG00010878 mRNA upstream 21048 3128252 ~ 3141209 (-) True AMCG00010878
AMCG00010880 mRNA upstream 34203 3141407 ~ 3143759 (-) True AMCG00010880
AMCG00010879 mRNA upstream 61221 3168425 ~ 3171989 (-) True AMCG00010879
AMCG00010883 mRNA upstream 83617 3190821 ~ 3209564 (-) True AMCG00010883
AMCG00010891 mRNA upstream 151739 3258943 ~ 3263464 (-) True AMCG00010891
TU128333 other downstream 325951 2739816 ~ 2778023 (-) True G102762
TU128350 other downstream 342710 2758478 ~ 2761264 (-) True G102774
TU127939 other downstream 2069100 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 2125847 975553 ~ 978127 (-) True G102434
TU127810 other downstream 2954145 145945 ~ 149829 (-) False AMCG00010794
TU128533 other upstream 72766 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 213609 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 218654 3325858 ~ 3327559 (-) False AMCG00010895
TU128666 other upstream 309164 3416368 ~ 3419176 (-) True G102990
TU128814 other upstream 1062589 4169793 ~ 4185974 (-) True G103112

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01070759_00001671_00006320.mRNA True 831 mRNA 0.48 5 CI01070759 1569 ~ 6320 (-)
rainbow trout (Oncorhynchus mykiss) LOC110505295 False 2484 mRNA 0.45 7 NC_048589.1 7986186 ~ 8004937 (+)