RNA id: AMCG00012740


Basic Information

Item Value
RNA id AMCG00012740
length 2701
RNA type mRNA
GC content 0.43
exon number 15
gene id AMCG00012740
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6243907 ~ 6264794 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTTACGTCATCAAGCGGGGTCCTTGTCGAGAAGGTCCTCACAGAGATGCACATGCTGTTTACATGTGAATCGGGTTGTACAAATTcgagatttatttttactgtcagTGTAGGGTACCAACAGAAGGGGTTTTTGTTGGGTTTGTGGTTCAAAATTGACCACATATACCTTAATTTAAggattcaataataaataataaactatgaGTTGTCAGATCACTTGTGTTGGATGGGTAAGCCGAGGAGCTGCAAAGGAAAGTCCTGATAAGGTTGAATTGAGCAAGGAAGAATTGCAACGTCTGGTCAACGAAGCAAAGGAGCAACTGCGGGAGGAAGGAGAAGATGCcgaagatgaagatgatgagGGGATGGTGAGCGGCCCGGAGCTGAGTGACGAGGCGGAAGCGCCTCAAGAGCCTGTTGAAGACGATGAAAACGAGAGCGGCCGAGAGGCGGTGGACGAGCTGGCGGAGTACGGCCTGGACAAATATGACGAGGACGACACAGATGCAACAAACCTAGGAGACAGCCTGGCAGGGCTCACTGTATACTGCAGTAATGAAGAAGACCCTTATATCACTATTAAGGACACTGATCAGTATGAAAGGGAagattttcaaattaaaccaaatgaCAATCTCGTTCTTGCTGGCAGGGCAGAGAAGGAATGTTGTAATCTGGAGATACATGTGTACAATTCTGAAGAGAACTCCTTTTACATACACCATGACATTCTCCTGCCTGCCTATCCTTTGTGTATTGAATGGCTGAACTTTGACCCCAACCCCGATGAAAgacaagGAAATTATGCTGCAGTTGGCAACATGACTCCTGTGATCGATATCTGGGACCTGGATGTGGTAGACTGCTTAGAGCCAAAAGCAGCTGCAGCCGCCGCGGAGGCAGTCGAGGGCCATGCCGATGCAGTGCTGGACCTTTCCTGGAACAAACTGGTTCGAAATGTGTTGGCCAGTGCATCTGCTGATAACACCATAATACTGTGGGACCTGGGGCAGGGCAAGCCAGCGACTACTCTgacaagacacacagacaagGTTCAGACTCTCAAATTCCATCCATTTGAAGCTCAGACCTTGATTTCTGGATCATTTGATAAATCAGCAGTCCTGTACGACTGTCGCAGTCCTAAAGATAGCCACCGAACATGGAGGTTTAGTGGTGAGGTTGAACGAGTCACATGGGACCATTTCTCCCCGTACAACTTTTTGACCAGCACCGAAGATGGCTTTGTTTACTGTTTGGACGCCCGCTCAGATAAACCTGTGTTTACTATCAAAGCTCACGATGGGGAAGTATCTGGTTTGGACCTGAGCAGTCAAATAAAGGGCTGTCTTGTAACCAGCTCTGCAGACAAACACGTGAAGATCTGGGATATCCTTGGAAACAAACCCAGTCTCATCCACTCCAGAGACATGAAAATGGGGGTATTGTTCTGTTCATCCTGTTGTCCTGACTTGCCATTCGTGTATGCTTTTGGTGGACAAAGGGAAGGACTACGAGTCTGGGATATAAGTGATGTTGCAGCAGTCAACACAACCTTTGGTAACCGGGAGAAGTTGGTTGTAAACACCCTTCCAGAGACAGCGGGGCCCAGCAGCAGCGGGACAGCCATGGAGTCATAGTTGAAGCCAGTCCAATGGAACCAAAAACTTCAGTAAAGTTAGCAGAAAGACCGTGGAGCTAGAAGACTGCAATCGGCTGCCTGTGGTGGTCTATGGCAGGGGTCTGCACtacagccctggtcctggagagctgtaGTCCTGTAGATTATTACTAGAAACTTAAAATGATCAATACGTAGAGatccaaataaaatgtgtatttgtactATTTAAGCAAACAAGTTGTGCCAATTAAGCAATTTGGAATTCGGACCACTTTCTCTTCAGGACCAGATTGCCAGAGCTTTAATTTATGATACTAGTTTGTGGTCTACACCAGTGAAACAAAACTTCACTGGACACAGCTGTGAAATGTAACTGGTTGGAAACgtttccttattttttcctctctctcctctctaatTTCATGTTCACTATTGCTGTATGTAGTTgcattttgaacatttaaatgacCATAGTTGgcttacaaagaaaaaaggaaaacaagaaactaGGAAAGGGAagggttgatttattttactactATAAATATGGTATTATTCCTAAATGTTACAAAGAAACCTTTTATAGCAAAAGGCCACATTCAACAGAATAAACTGATCATAAAATCATATCACCactgtctgtattttgtttgttttgttttatagaaaatgcacttagataaatagataaagcCATTGGAGAACAATTTAAGAGACCCAATCATAAAGGCGATGTACACAACACTGGTAAAGCCAGGTCATGATATCTAAGTACTTGTCATGGGGTTTGAGAAGAGTATATCTGTACCTGCATATTAGCCTATGGAGCCATTCtttaacaaacaatacattggCTTGTTACATGATTTCATTGAAGAAACAtctaagattttattttcacattctgaaGGCACATTGGGAAGAATCGTACCTAGGAGGAGAAATGTGCCTCAATTCCGCTGATTTGTACGGGCTACATTATATATGGCatttgtgattttgaagacatttgaaatgtattcatacaataaaaataaatgcagaatagTGTCTGACATTCCACTTTATGTGAG

Function

GO: NA

KEGG:

id description
K14791 PWP1; periodic tryptophan protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49104 lncRNA upstream 187335 6053148 ~ 6056572 (+) True AMCG00012734
TU49089 lncRNA upstream 320884 5922614 ~ 5923023 (+) True G39382
TU49015 lncRNA upstream 595800 5647774 ~ 5648107 (+) True G39321
TU48966 lncRNA upstream 806745 5436833 ~ 5437162 (+) True G39279
TU48836 lncRNA upstream 1169781 5037547 ~ 5074126 (+) True G39193
TU49169 lncRNA downstream 20140 6284934 ~ 6287936 (+) True G39445
TU49225 lncRNA downstream 247854 6512648 ~ 6536393 (+) True G39490
TU49284 lncRNA downstream 497171 6761965 ~ 6762278 (+) True G39538
TU49318 lncRNA downstream 633203 6897997 ~ 6898230 (+) True G39560
TU49358 lncRNA downstream 948951 7213745 ~ 7218459 (+) True G39586
AMCG00012741 mRNA upstream 12617 6193260 ~ 6231290 (+) True AMCG00012741
AMCG00012737 mRNA upstream 142297 6100581 ~ 6101610 (+) True AMCG00012737
AMCG00012734 mRNA upstream 187075 6053242 ~ 6056832 (+) False AMCG00012734
AMCG00012729 mRNA upstream 204317 6032753 ~ 6039590 (+) True AMCG00012729
AMCG00012718 mRNA upstream 420392 5807857 ~ 5823515 (+) True AMCG00012718
AMCG00012738 mRNA downstream 948 6265742 ~ 6269443 (+) True AMCG00012738
AMCG00012739 mRNA downstream 15506 6280300 ~ 6282779 (+) True AMCG00012739
AMCG00012750 mRNA downstream 119011 6383805 ~ 6412746 (+) True AMCG00012750
AMCG00012749 mRNA downstream 173249 6438043 ~ 6453810 (+) True AMCG00012749
AMCG00012748 mRNA downstream 211455 6476249 ~ 6517983 (+) True AMCG00012748
TU49057 other upstream 420587 5807846 ~ 5823320 (+) False AMCG00012718
TU48986 other upstream 691140 5552417 ~ 5552767 (+) True G39297
TU48550 other upstream 1870333 4370313 ~ 4373574 (+) True G38954
TU47823 other upstream 5419199 820524 ~ 824708 (+) False AMCG00012639
TU49223 other downstream 252614 6517408 ~ 6517921 (+) False AMCG00012748
TU49477 other downstream 1460694 7725488 ~ 7727828 (+) True G39670
TU49527 other downstream 1570552 7835346 ~ 7836214 (+) True G39709
TU49939 other downstream 2847666 9112460 ~ 9113101 (+) False AMCG00012820
TU50138 other downstream 4172113 10436907 ~ 10444447 (+) True G40224

Expression Profile