RNA id: AMCG00014741


Basic Information

Item Value
RNA id AMCG00014741
length 1956
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00014741
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29383488 ~ 29398221 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttatgtgttttctgGCGGTTTGCATCGACGCTTTTCGATGAAATGTTGTTTCCTGTGCGGCCGGCTGTTAAAAACGACGCTCATATGCCGGCGGAGGTGTGGAGTTCGCAAGCGCGGCTGGAGAAGTGGCACTAGCGGCGAGAGAGGGGACAGGGCAAAATGTGGCATGTGGGATCCATTAACCCTGTGTGCACAGCGTTGGGGTTTTTACCTACAATATGGGCACTTTATTGTGGGTCTGAACACCTGAGTGCTGTTTATTACGGGACAGGGACGCCGGGTTTCGCGTGAGCGGGATGAATTATGACCGAGATAGAGCAAACGGGGCTGGTCGGCCTGCTCGCTATTGTGTCGgataaatcataaaatagtTGCCCACGTTTTGGTGTTAAAAACGACTAAGTAGCCCAACTAACGAACAAAAAGACGCCAAATGATACATTATAGTTTCTGAAAGGGTATTGATAAGCGAAACACGTCGGAAATTGATTAAAACGTTGTTTTTATTGAAACGGCCTACTGCTGGAAGTGAGACCGGGCAGCCCCGGCCGAAGGAAGCGGCAAGGCAGCGATGAATAATTAGTTGATCGCAGTCGACTGctgggaaatatatttttgctctACTGCAACTTTTAACTAGCAAGCTATCTGCTGTATGTTCGCAGAAAAcgaatacacatttatattaatgtatgcatcGGGTACAAAAATGCAGCTACTGATCCGATTTGGTCGCGGTCTTGTAGCGCAGGTTTCGGCAGggctgcgcagatctgcactttGCTTGTGTAATATAATTGGTTCCAAGGTGCAGATCTGTGTAGAACTGCGGAAATTGCGCTACAAGAAATCGacctttattttgctttctagGGCACATTAGGATGTACCAGGAAGTTgttgattttaataatcattGCTTTTAATGGCTACCGATTTTAAAATTATGGTCATGGGTTGTATAGATAATTTTACAATGAGTTGAAAGTATAACGTTTATAATATCGATAGCACGCCTCTCGTGGCTACATTGTACCTAGATGTATTACTAACCAGGCAATGTACACTGGATTCTTCGAGCATCTTCCAAAATCCTGTGTAATCACAATCACGGCTGGATTAACTTCAGTAGTCAATTGTTCATTCTACTTTAAAATTGGGGCATGTCGCCATGGAGACCGGTGTTCCAGGTTGCACAATAAGCCAACTTTCAGCCAGacCATTGCCCTCTTGAACATTTACCGTAACCCTCAAAACACTGCCCAGTCTGCTGATGGTTTACGCTGCGCTGTTAGCGATGTGGAAATGCAAGAGCATTATGATGAATTCTTTGAGGAGGTCTTCACAGAGATGGAGGAGAAATACGGGGAAGTGGAAGAAATGAATGTTTGTGACAATCTGGGGGATCACTTGGTTGGCAACGTGTATGTGAAGTTCCGTCGAGAGGAAGATGCTGAGAAGGCTGTAATGGATTTAAATAACCGCTGGTTCAATGGGCAGCCCATTCATGCAGAGCTTTCACCTGTCACAGACTTCAGGGAAGCTTGCTGTCGCCAGTATGAGATGGGAGAGTGCACTCGAGGAGGGTTCTGCAACTTCATGCACCTGAAGCCCATTTCCCGGGAGCTCCGTCGGGAGCTGTATGGTCGCCGCCGGAAAAGGCACCGGTCTCGCTCGCGATCTCGTGAACGTCGCTCCCGCTCCCGGGACAGAGGCAGAGGTGGAGGCGGGGGGCGTGACCGCGAGAGGAGAAGATCGAGGGATCGGGAGAGATCCGGCCGTTTCTGAGGGAGAGATGAGATTGTTCGTACCCACATAGAATTTGTTGTAGTCTTACAATGaccaaaatgtgtttgaaatgttggACTTGttacctttcttctttttttaagaaaaaaaaaaaagcttgctttctcaataaaacaaactttgtaGTGCTTCTACAGCCTGTGTTAT

Function

GO: NA

KEGG:

id description
K12836 U2AF1; splicing factor U2AF 35 kDa subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90544 lncRNA upstream 110970 29268329 ~ 29272518 (+) False AMCG00014738
TU90543 lncRNA upstream 110970 29270851 ~ 29272518 (+) False AMCG00014738
TU90536 lncRNA upstream 130783 29249246 ~ 29252705 (+) True AMCG00014739
TU90518 lncRNA upstream 191210 29191971 ~ 29192278 (+) True G72426
TU90507 lncRNA upstream 223063 29157025 ~ 29160425 (+) True G72415
TU90738 lncRNA downstream 445246 29843467 ~ 29846586 (+) True AMCG00014757
TU90938 lncRNA downstream 1438615 30836836 ~ 30837169 (+) True G72767
TU90940 lncRNA downstream 1443339 30841560 ~ 30844670 (+) True G72768
TU90941 lncRNA downstream 1447941 30846162 ~ 30846421 (+) True G72769
TU90963 lncRNA downstream 1557684 30955905 ~ 30956284 (+) True G72783
AMCG00014737 mRNA upstream 61896 29307940 ~ 29321592 (+) True AMCG00014737
AMCG00014738 mRNA upstream 104339 29269638 ~ 29279149 (+) True AMCG00014738
AMCG00014739 mRNA upstream 127134 29247875 ~ 29256354 (+) False AMCG00014739
AMCG00014733 mRNA upstream 254446 29120951 ~ 29129042 (+) True AMCG00014733
AMCG00014734 mRNA upstream 272850 29096129 ~ 29110638 (+) True AMCG00014734
AMCG00014740 mRNA downstream 2411 29400632 ~ 29421379 (+) True AMCG00014740
AMCG00014736 mRNA downstream 33300 29431521 ~ 29437107 (+) True AMCG00014736
AMCG00014743 mRNA downstream 142310 29540531 ~ 29558701 (+) True AMCG00014743
AMCG00014746 mRNA downstream 190580 29588801 ~ 29614037 (+) True AMCG00014746
AMCG00014745 mRNA downstream 245555 29643776 ~ 29649810 (+) True AMCG00014745
TU90214 other upstream 1079415 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 1503688 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 1541617 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 6527842 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 11109128 18271854 ~ 18274360 (+) True G71004
TU90740 other downstream 453229 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 1366130 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 1579995 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 1581349 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 1591842 30990063 ~ 30996363 (+) True G72787

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073920 True 1004 mRNA 0.48 8 NC_007120.7 9230446 ~ 9242777 (-)