RNA id: AMCG00015680


Basic Information

Item Value
RNA id AMCG00015680
length 2112
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00015680
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 16445972 ~ 16448187 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCGGGAAGAGAGACTAAAACATGACAAACCCCACTGTTTCACTTACACCTTTGACTCTGGGAAGTCTTACAGTGTGACCTGCAGTTCAATAGGGACAGTGCTAGATGCGCTCAGGCAGAGCAAGAACTTCCGTGACAGAGTGAAACTCTTCCCTAAGAAGCGGGAAGATCTGGTCATTGTGGGGAAGGAGCACCTGATTGGCATTGTCAGCCCCCACTGTCCCTGCTCCTTCATACCAGACCATGAGAATTTTCATCTGAAGCTCATCAAGCGGCAAGATGGCAGCTCTAAGCCTCCCGATGCTGCTGCTCTTTGGGTGGACACCCCAGCAAATAGGGTGCTGTTCTTTATATTGTGTCAAGGTAAAGAGCTCACCAGAGACCGTTTGGTGCTCAAAAACCCCCGCCTGAGTGAGCTCTGTGAGACGAAGACACAGCACTGCGTGGAGCTGTCCTCACTGGTGGATGACCTGAATGAAAAAGAGTACGTCCTGACTATGTCTGTGAAACCCAGAGAGCCAGACAGCCAGGAGCTGCTTTCTGATGATGGGGGTCACTCTGAGAACAGTCAGACCACAGCTGATGCTAACAAAGAGAacaaggagaaagagaaagagatgaaGGAGAAGGGGAATgaggaggaaaagaagaagGAGATGGAGCAGGAGAATGAGAAGAacaaggaggagaagaaaacaaagttcCAGTTGATCCCTGACTCTGGTAAGGTCCTCCAGCTCCTGCGCTCCCAGTTCAAGGGTCTGTTGGAGACcctgagagaaagggagaacATCAATAGCTTTTCAAAGGTCCAGGGGCTGTTCCGTGAGGAGTTTGGCAAAAGTACGGCCCTGTTCTCCGAGGTGTGGAGGGTGAAGCTGCTGGGAGAGTTGAGCGACTCAGCCGGTCAGGTGCTGGTGGAAGGGAATCCGGTGGGGTCAGGGTTCCTGCTTTTTGATCATTGCGTCCTGACCAACGCCCACGTCCTTGAGGGGTTCCTGGAGGACTGCAAGAGGAGGCTGCGCAGGCAGGTGAGCGTCACGTTCCAGCACCTGGAGACTGGCTCCCTGGGGAAGAGGCGGGCGGCCAGGCCGGATCTGGTGGCCTTTGACCGGTCGGTGGACTACGCCTTGATGGAGCTGCAGCCTGGTGCTCCGCTCCCCGCTCCTCTCCTGGGGAGATTTGACCGGCCCCCAACCCGTGGAGGCATCTGCGTGGTGGGCCACCCTGAGGGGGGGGTGAAGAAGGTGGACCCGTGCCTGGTGATCGAGTTTGAGAAACGCAGGGAGGCCGTGGACAGGCACCACTGGGAGAACGTGCGCTACATCCAGCTCTTCACTGAGTCGCCGCGGGATTTCCGGGAGCTGAGTGACAAGGGGAAGCTGACCTATGACTCCTGCTTCTTCCACGGCTCCTCAGGGTCACCTGTCTTCGACAACCTGGGCCGGCTGGTGGCTGTGCACACGGGGGGGTATGCTTATAAACTTCCCAAGGGCACCACCAAGAGTTTCATTGAGTTCGCTGTGTCTTTGTGGGATATTCTGAGCAGCATGCTGAAGCAGCTAGTAGCTGGAGCTgtggagcaggagagagagaggatggagacggagagaggggAGCATGAGATGGGTGAGGGTAGAGGGGAGAGCACCTCTCTCAGGGTGCTGCTGCAATTGGCTGAGGCGTCAAGTGGAAACGGGGAGCTGGGGGCTGTGCTGACAGAAGTGAGCCAGGATGAGCAGTTCATGAAGGGGCTGAATGATCTGGGGGGGCTCTATGGAGTGGTGGgacagggagaggagggggagggcagTGGGCTCATTGGGAATAGGGGGGAGGTGACCGTGGAGACCTTCCTGAAGTTTCTCAGGATGTGTgctggagaggagggggagcagcagctgcaagagcagggggagagggaggaagagcaagatgaggaagaggaagagtgGGAGGCTGAGGGGAGGGAGGTTCTGAttgtggaagaggaggagagagggattgcAAACAGAGAGATGCAGAATGAGGGAAGGATTCAAGGGCAGAGTGAGGCCCCACAGGAGGGGGTGGCACTGTGTGAGCAGGAACCCATGGAGGTGGAGTAG

Function

GO: NA

KEGG:

id description
K24274 FAM111A; protein FAM111A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124575 lncRNA downstream 17346 16424750 ~ 16428626 (-) True G99724
TU124513 lncRNA downstream 134002 16311708 ~ 16311970 (-) True G99679
TU124452 lncRNA downstream 315677 16130064 ~ 16130295 (-) True G99623
TU124443 lncRNA downstream 377843 16060196 ~ 16068129 (-) True G99614
TU124406 lncRNA downstream 441942 15999802 ~ 16004030 (-) False G99596
TU124598 lncRNA upstream 22720 16470907 ~ 16473177 (-) True AMCG00015681
TU124602 lncRNA upstream 49298 16497485 ~ 16498531 (-) True G99735
TU124557 lncRNA upstream 55604 16503791 ~ 16527927 (-) True G99710
TU124629 lncRNA upstream 112398 16560585 ~ 16572276 (-) True G99758
TU124647 lncRNA upstream 144158 16592345 ~ 16593507 (-) False AMCG00015694
AMCG00015677 mRNA downstream 121445 16315488 ~ 16324527 (-) True AMCG00015677
AMCG00015676 mRNA downstream 173325 16252419 ~ 16272647 (-) True AMCG00015676
AMCG00015672 mRNA downstream 385971 16057802 ~ 16060001 (-) True AMCG00015672
AMCG00015667 mRNA downstream 631613 15792513 ~ 15814359 (-) True AMCG00015667
AMCG00015666 mRNA downstream 742851 15687642 ~ 15703121 (-) False AMCG00015666
AMCG00015683 mRNA upstream 12535 16460722 ~ 16463940 (-) True AMCG00015683
AMCG00015681 mRNA upstream 19112 16467299 ~ 16470946 (-) False AMCG00015681
AMCG00015691 mRNA upstream 75927 16524114 ~ 16535290 (-) False AMCG00015691
AMCG00015690 mRNA upstream 88360 16536547 ~ 16546886 (-) True AMCG00015690
AMCG00015695 mRNA upstream 127071 16575258 ~ 16579210 (-) True AMCG00015695
TU124478 other downstream 223817 16221765 ~ 16222155 (-) True G99646
TU124430 other downstream 343516 16017583 ~ 16102456 (-) True G99605
TU124288 other downstream 742682 15701078 ~ 15703290 (-) True AMCG00015666
TU124200 other downstream 1185488 15259461 ~ 15260484 (-) True G99454
TU124175 other downstream 1274300 15170615 ~ 15171672 (-) False AMCG00015659
TU124562 other upstream 81190 16529377 ~ 16535468 (-) True AMCG00015691
TU124837 other upstream 1389393 17837580 ~ 17837942 (-) True G99939
TU124970 other upstream 2180156 18628343 ~ 18630665 (-) False AMCG00015723
TU125314 other upstream 3526769 19974956 ~ 19976069 (-) False AMCG00015752
TU125431 other upstream 3821642 20269829 ~ 20279644 (-) False AMCG00015761

Expression Profile