RNA id: TU124562


Basic Information

Item Value
RNA id TU124562
length 3480
RNA type TUCP
GC content 0.49
exon number 5
gene id AMCG00015691
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 16524114 ~ 16535468 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGGGTATCTGTGTTTAGTTAACTTTAAGAGAGTATTAACATCGAATCGCATCGAGCTGAACACATGGGGAAAAACTACTGACAACGATCCCGACTTCCGCCAGACTGACCCCGCTGACCCCGTGACGTCACAAACTCGTTGTGCTGGCAGGAGTGCGCGGGAGTCGGACCCGTGTGGATGTGCAGTGTGTAGGGTCGTGCAGGACAGTGGAGATGTCGTCCAGATGCTTGCAGAGCTACAGGGAGCGCTGCCAAGAGTTCggtgtcCCTCAGTGGGTGGCAGTGCTGCTGTCCATCGCCTCACAGCAGAAGAgcaacagagagagacgcaggAGAGCTTACAGACTCATCTGTCGCATTTTGtgtCGAGGTGGTGTGGGAGGGCAGAGGTATGTGACGCTGGTGTTCCCCCCACCTCTGAAGGCTCTGCTGCGCTGTGTCTTCCCTGGGGAGTTGTGTGACTACCCCGACCCCACCCACCCCAGGGTGATTCACGTGACTCTGGCTGACCTTCTCCGCATGAGCCTGGAGGACTGAGGTGTCCCATGATGCACTGCAGGGCCACAGATGCACAGGAGGGCTGATACACTGCTGTTAATGTTACTGTTACTGATGTAGTTCGTGTTAATACTGTTAAAGTTATGCTTCTTCCTGTTCATATAGCAATTGTTCAGTCCGTATCAACACTACCCTGAATCCCTgtttccctctgtctctctgctgttGTTTCACAAGTCAGATAATGTGGCTTTGTTTAATATTCAGACAGGGTTCAGCGTAATAAAGCAGGCGTGCTGCTCTGACCAGGCTGTTGTGTTCTTACAAAAAGAGCAGGTTTACAATGACTCTgctgtctctcttctctctctctccctccccccctctctctcaatgcagtgttaatgtattttagtgTCCAGTCcttcagacagtcagtgtgtctatTTTAACTGCCCCCCTGTATCTTTACTTttgaggaaaacatttttttttcgcTGTAGtttgactttttatttgtgttctctTTTTTGTTCACTGCACTGCAGTACCCCCTCCCTCAGTTATTCTGGTATTGTGCTGACAGAGCACAGGTGAGCACAAtacctgagaaagagagagaggagaaagaaagaaagaaagaaagaaagagggggggactgtacagggagagagacagaggggtgGGTGGttgtagagggagagagagtgagagagttcATAGAGGCACACTGAGCACTGAGAAAGGTGAAGGGTTAATTCAGAACCCACTGACTGAACATTGAAATACAGTAACACTGAGAGGGCAAATGACAGAAAGATGGATGGAGGAGGTGTAGAGGTCTCTCAGTTATTCTGGTATTGTGCTGACTGCACAGGTGAGCAGAACACCTGacaaaaagagagggaggaagaggggggtgGCAGAGAGACTGTGTGAATGTAGAGAAGCACAGgagtatgagagagagagagagagactgggtggacactgcagtacagtaacactgcgctgagagagagttaatacagtacagactcCGAGTACACTAGAGTACAGTAACACtgcgctgagagagagagaaaaggagagagggatggaggacAAAAGGAATTTGAAAGGACGCGCCGTTATTGAGgtcgagggagggaggggtagggggaggagagagtgagggggagagagaaggagagagaaggagagaagacAGTCAGTTGAGTTCAGTGCTCTGGtctgtgttgctgtgctgtTACACTCTGACGGAAGAGAGAAGGATTAGGAGGATTGTTCAATGTCATACAGTGACACTGGGTATGttatctgtgtgagtgtgtaagagtgaatgtgttttgtgtgtatctgtgtcggtgcatctgttttgtgtctgtgtgtctttgtcagtgtgtgtttattatattgcatttgtgtgtgtgtgagtgatagTGTGTCAATATCGTTGTGTTTCtttgtgaaactgaaaactgttgtAAAAACAGaccatctatctatctgtcttaTCTATATATCGTTTATTTATgtaggtatgtatttatttatttattttctcttccagGTGACCTACAGATCTACAATAacctgagagacagacagacacacacaaacacacacattacataatGAAAAACTGactacagtccagtacagagatagggagagaaagggggctgagagggggaggaagaggtgTAGACTTATTGAGGGGTGTACATAATTGGACATGTtacaaagcaaaccaaaataGAACATCTAATTAATAAGTCGTTAGACTAATGGCGCAATTAGACTGACgtcagagacagggagagaggaggagggaaggGGGACAGTGGGTGAGAGGAAGCAAGAGGTGGACAAAAAGAGACAGGGAGGAAgtagagagagaagaggagtgGGCGAGAGGGGAGAGGGACAATACAGATTAATTGGACACTGCAGTATATTAACACTgcccagagagagacagatacactCTCCGACAGATAGACAAACAAGGGGAGAAATGTAGAACAAATATGCTTtcactgtctctccctctgacagagagagagacaggaagcaGGTTaacataatacagtacagatcagactgactgagacactgactgaaACTGCACAGGTCTCTGTTTGactgtctgtctctatctctctttctgtgtgtctgtctgtttgtctctctgtgtgtttccctctttgtgtgtgtgtgtgtgtctctttacctgtctgtgtgtctttctgtctctgtctgtgggtgtatctctgtccctgtctgtgtgtgcgtctctctgtccctgtttGTGGgtgtctctctgtcactgtctgtgtgtgtctctctgtcactgtctgtgtgtgcgtctctctgtccctgtctgtgtgcgcgtctctctgtccctgtctgtgtctctctttgtccctgtctgtgtgtctctctgtccctgtctgtgtgtgcgtctctctgtccctgtctgtgtgtgtctcactgaccctgtctgtgtgtgtctctgtccttGTCTGTGTGCgcgtctctctgtccctgtctgtgtgtgcgtctctctgtccctgtctgtgtgtgtgtctctctgtcactgtctgtgtgtgcgtctctctgttactgtctgtgtgtgtctctcggtccctgtctgtgtgtgtgtctctctgtccctgtctgggTGGGTGTTTTTCCTccgtgtctcagtgtgtctctgtgttggaGATGAGTGTCCAGAGATCCTCTAAGATCAGTATCCAGGAGCACATGGCCATCAATGTGTGTCCCGGGCCCATCCGCCCCATACAGTGCATCTCCGACTTCTTCCCACGCTTCCACACCTTCCCCtgcccccctccacccccacgcccccccccccagcctcaggaacagggggagaggggggggcagtgtgaggaggaggaggaggaggagagggagaaggagaaggagaagcagagggagagagagaggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124557 lncRNA downstream 1450 16503791 ~ 16527927 (-) True G99710
TU124602 lncRNA downstream 30846 16497485 ~ 16498531 (-) True G99735
TU124598 lncRNA downstream 56200 16470907 ~ 16473177 (-) True AMCG00015681
TU124575 lncRNA downstream 100751 16424750 ~ 16428626 (-) True G99724
TU124513 lncRNA downstream 217407 16311708 ~ 16311970 (-) True G99679
TU124629 lncRNA upstream 25117 16560585 ~ 16572276 (-) True G99758
TU124647 lncRNA upstream 56877 16592345 ~ 16593507 (-) False AMCG00015694
TU124648 lncRNA upstream 63625 16599093 ~ 16600378 (-) True G99777
TU124679 lncRNA upstream 178979 16714447 ~ 16714835 (-) True G99804
TU124692 lncRNA upstream 335174 16870642 ~ 16871119 (-) True G99816
AMCG00015681 mRNA downstream 58431 16467299 ~ 16470946 (-) False AMCG00015681
AMCG00015683 mRNA downstream 65437 16460722 ~ 16463940 (-) True AMCG00015683
AMCG00015680 mRNA downstream 81190 16445972 ~ 16448187 (-) True AMCG00015680
AMCG00015677 mRNA downstream 204850 16315488 ~ 16324527 (-) True AMCG00015677
AMCG00015676 mRNA downstream 256730 16252419 ~ 16272647 (-) True AMCG00015676
AMCG00015690 mRNA upstream 1079 16536547 ~ 16546886 (-) True AMCG00015690
AMCG00015695 mRNA upstream 39790 16575258 ~ 16579210 (-) True AMCG00015695
AMCG00015696 mRNA upstream 46227 16581695 ~ 16590999 (-) True AMCG00015696
AMCG00015694 mRNA upstream 56760 16592228 ~ 16611444 (-) True AMCG00015694
AMCG00015697 mRNA upstream 80145 16615613 ~ 16650920 (-) True AMCG00015697
TU124478 other downstream 307222 16221765 ~ 16222155 (-) True G99646
TU124430 other downstream 426921 16017583 ~ 16102456 (-) True G99605
TU124288 other downstream 826087 15701078 ~ 15703290 (-) True AMCG00015666
TU124200 other downstream 1268893 15259461 ~ 15260484 (-) True G99454
TU124167 other downstream 1339983 15102617 ~ 15189394 (-) True G99426
TU124837 other upstream 1302112 17837580 ~ 17837942 (-) True G99939
TU124970 other upstream 2092875 18628343 ~ 18630665 (-) False AMCG00015723
TU125314 other upstream 3439488 19974956 ~ 19976069 (-) False AMCG00015752
TU125431 other upstream 3734361 20269829 ~ 20279644 (-) False AMCG00015761
TU126211 other upstream 8457485 24992953 ~ 25000890 (-) True G101067

Expression Profile