RNA id: TU40434


Basic Information

Item Value
RNA id TU40434
length 1754
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G32290
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9349849 ~ 9352655 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTATGACTGCTTTCAGCGAGTTGAAGATGACGTTGAAAAAGCTGGAGACAGAGACTCTCTGGGTTCCTGTGAATTGGACACACTCctaatatagaaatatatatatacacacaagaaAGGGAAGGACTTTTAAATGCAATTCCTGCAAAAGCATGAAGCATTTCACTTTTGTCTAACATTTTTATACAGCTCACCAACATCCAAGTATCTCCCTCGCAGGGTCGGTCATCTTCACAGGGATAGTTGAGTATTTTTTCCTGAATTCTGTTCCTGACACTggatttctatttaaatatgtacatagCTTACTGATGCGTTGTCAATTAGGATTCCTCGCCAGTCTGACTGCCAACCAGCCGTGTGCCAGGATGGACATGTGTcttagtgtatttttaacattagtTTATAGAAACCAAAGggattactatttttattatatttctttggaAGGAAGgtttatatgtaaatgtttgtataGGACATGGAAGCAAAGATAAAAGTGTTTGTCTTTGCAGTCTTAAGGTTACAGTTTTAACTAATTTCAAACAGATTCTACCCTGGATGTCAATAGAATTTGCACATGTGCATTCAATAAAGCAAAGACATAACTGTATttgttataaattaatatattttttagaatcTGCTGTTTTACATATTCTTCATGTACATATTTCCCATCATCTTTTCTGGAGTGTTTTGGAAATCCTCTGTGTCAgtggtaatattttaaataaactaagttaccattttacaaattcaataatCAACATGACCCCCACACTGGTTTCTTAAAATGCCATTTAGTTCTGTTTTTCAAGTTGTAATTCATTCAGAAGCTATTTTAAAACCTCCACCCTTCTTATGAAGGTGCCCGATATAACAGTTTGCCTCTAAAAGTTACCAGACTTTGGCTCCCAGATACAAGAAATGTTCTCAATCTTGTATAATTAGGGTGGAGTTTACTTGCATTTATTCTCGTAAAATGGTCTAAAACAAGGAATTTAACAGAAGGTTCTAAACATTTCCAGATTTACTACTGAAGCAAATGTTAAATTGCTACTTCTCAGTTATCAGGGTTtgcgtttatttttatttttaatttttgtatgtaaGTGTTGCTTGTTACTTAGAGGTGTTGTTGAGTTCACTTCGTGCTTGAGCTTATATCTTTACAACATATCTGTGGCACCTAGATGTGAAGAATTTTAGTGCAACTATTTATGAAAGGACGTGGCAGGGAAAGTGAAATCTCTCCGCTGTGTATTTTTAGAAGCGTCTGTTCTAGTTTCTAAATTTTGGCTTTGAACAATCATGCTCAACATTCCATGTAAATATTTACCTCGCAATGTGCCGGTTTGGTCACCAGCAgcactgtaattgtattttaatagtccttaaaattatacaatattttttaattagtgttGTACATTAGATACATGTCCAGAGCAAGGATTGGTCCCTTTTgtcaatgcattttgtttttaaatgacttacCAAAAACAAGATCTAAATCCCTTTtgcattatatttgaattatgaAAGGTTTTTTCTTATACtgccatgtttttaaagttttgattaatCCATTAAAACTCCGACATCAGcctactttttaaaacaatttgtctttCTCTCCAAAAGCAACATTTGCAGTAGAATTTTTCCTAATATACTTTTTCTTCAGTGATGCAAACAGCAAATGTTATCCTTCTTAATAcccattttctgtatttgaaacGAAAGTATCt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40431 lncRNA upstream 25786 9308637 ~ 9324063 (+) True G32287
TU40402 lncRNA upstream 127340 9163643 ~ 9222509 (+) True G32268
TU40344 lncRNA upstream 416103 8895239 ~ 8933746 (+) True G32235
TU40198 lncRNA upstream 1002556 8345455 ~ 8347293 (+) False G32130
TU40173 lncRNA upstream 1177988 8171645 ~ 8171861 (+) True G32113
TU40474 lncRNA downstream 340614 9693269 ~ 9750270 (+) True G32321
TU40479 lncRNA downstream 365367 9718022 ~ 9718564 (+) True G32324
TU40482 lncRNA downstream 366384 9719039 ~ 9726753 (+) True G32325
TU40475 lncRNA downstream 389592 9742247 ~ 9750270 (+) False G32321
TU40581 lncRNA downstream 457229 9809884 ~ 9812637 (+) True G32418
AMCG00019215 mRNA upstream 1208 9336645 ~ 9348641 (+) False AMCG00019215
AMCG00019206 mRNA upstream 293993 9046918 ~ 9055856 (+) True AMCG00019206
AMCG00019205 mRNA upstream 564910 8781781 ~ 8784939 (+) True AMCG00019205
AMCG00019202 mRNA upstream 743729 8577925 ~ 8606120 (+) True AMCG00019202
AMCG00019200 mRNA upstream 808544 8540613 ~ 8541305 (+) True AMCG00019200
AMCG00019214 mRNA downstream 4443 9357098 ~ 9376745 (+) True AMCG00019214
AMCG00019212 mRNA downstream 54646 9407301 ~ 9414186 (+) True AMCG00019212
AMCG00019217 mRNA downstream 273755 9626410 ~ 9628658 (+) True AMCG00019217
AMCG00019218 mRNA downstream 301671 9654326 ~ 9663886 (+) True AMCG00019218
AMCG00019219 mRNA downstream 325005 9677660 ~ 9714621 (+) True AMCG00019219
TU40432 other upstream 1030 9329479 ~ 9348819 (+) True AMCG00019215
TU40197 other upstream 965257 8345455 ~ 8384592 (+) False G32130
TU40199 other upstream 965257 8345455 ~ 8384592 (+) True G32130
TU40051 other upstream 1928766 7420501 ~ 7421083 (+) True G32005
TU39314 other upstream 6139166 3203787 ~ 3210683 (+) False AMCG00019100
TU40438 other downstream 17243 9369898 ~ 9628662 (+) True G32293
TU40734 other downstream 1051984 10404639 ~ 10409497 (+) True G32539
TU41554 other downstream 5086598 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 5811693 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 6691287 16043942 ~ 16081943 (+) True G33406

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00010261 True 4175 mRNA 0.40 16 NC_007123.7 23175963 ~ 23320266 (-)
mexican tetra (Astyanax mexicanus) TU71131 True 2170 lncRNA 0.36 2 NC_035902.1 17187540 ~ 17251623 (-)