RNA id: TU40431


Basic Information

Item Value
RNA id TU40431
length 541
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id G32287
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9308637 ~ 9324063 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAGATCAATTCTATAATCCAATCTAATACACCTATGAAGCTGTCATAGTAAGTTACACCAATACAGGTTCCCTGGTGTTGACTGGtgtttattcatgtgttttttttcattcgCAGTGTTTACTTTCTGTCCACGACACAGTGGCACAGAAAAGTTATGATCCAGAGCTGCCACCACTGCCAGATGATATTGACGATGATGAAGACTCTGTAAAGATCATCCGACTGGTGAAAAACAAGGAGCCACTGGGGGCAACGATAAAAAGGGATGAACAGACTGGAGCTGTTGTTGTAGCGAGAATAATGAGAGGAGGAGCTGCTGATAGAAGTGgtCTAATCCATGTGGGAGATGAGCTGAGGGAAGTGAATGGGATTCCTGTTGAAGACAAAAAGCCGGAGgaaatcattcatattttgGCCCAGTCCCAAGGggcaataacatttaaaataataccagGCATCAAAGAGGAATCCATAACCAAGGAGCCTAAGATGTTTGTCAAATCCTTTTTTGACTATGATCCTAATGAGGACAAANNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40402 lncRNA upstream 86128 9163643 ~ 9222509 (+) True G32268
TU40344 lncRNA upstream 374891 8895239 ~ 8933746 (+) True G32235
TU40198 lncRNA upstream 961344 8345455 ~ 8347293 (+) False G32130
TU40173 lncRNA upstream 1136776 8171645 ~ 8171861 (+) True G32113
TU40100 lncRNA upstream 1687825 7620504 ~ 7620812 (+) True G32048
TU40434 lncRNA downstream 25786 9349849 ~ 9352655 (+) True G32290
TU40474 lncRNA downstream 369206 9693269 ~ 9750270 (+) True G32321
TU40479 lncRNA downstream 393959 9718022 ~ 9718564 (+) True G32324
TU40482 lncRNA downstream 394976 9719039 ~ 9726753 (+) True G32325
TU40475 lncRNA downstream 418184 9742247 ~ 9750270 (+) False G32321
AMCG00019206 mRNA upstream 252781 9046918 ~ 9055856 (+) True AMCG00019206
AMCG00019205 mRNA upstream 523698 8781781 ~ 8784939 (+) True AMCG00019205
AMCG00019202 mRNA upstream 702517 8577925 ~ 8606120 (+) True AMCG00019202
AMCG00019200 mRNA upstream 767332 8540613 ~ 8541305 (+) True AMCG00019200
AMCG00019201 mRNA upstream 786783 8497875 ~ 8521854 (+) True AMCG00019201
AMCG00019215 mRNA downstream 12582 9336645 ~ 9348641 (+) False AMCG00019215
AMCG00019214 mRNA downstream 33035 9357098 ~ 9376745 (+) True AMCG00019214
AMCG00019212 mRNA downstream 83238 9407301 ~ 9414186 (+) True AMCG00019212
AMCG00019217 mRNA downstream 302347 9626410 ~ 9628658 (+) True AMCG00019217
AMCG00019218 mRNA downstream 330263 9654326 ~ 9663886 (+) True AMCG00019218
TU40197 other upstream 924045 8345455 ~ 8384592 (+) False G32130
TU40199 other upstream 924045 8345455 ~ 8384592 (+) True G32130
TU40051 other upstream 1887554 7420501 ~ 7421083 (+) True G32005
TU39314 other upstream 6097954 3203787 ~ 3210683 (+) False AMCG00019100
TU40432 other downstream 5416 9329479 ~ 9348819 (+) True AMCG00019215
TU40438 other downstream 45835 9369898 ~ 9628662 (+) True G32293
TU40734 other downstream 1080576 10404639 ~ 10409497 (+) True G32539
TU41554 other downstream 5115190 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 5840285 15164348 ~ 15169841 (+) True G33283

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030457 True 714 mRNA 0.51 7 NC_007113.7 3881000 ~ 3894103 (+)