RNA id: AMCG00019205


Basic Information

Item Value
RNA id AMCG00019205
length 2806
RNA type mRNA
GC content 0.52
exon number 2
gene id AMCG00019205
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 8781781 ~ 8784939 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAACgtacattgttatttttgacAGATGAGCCAAGATCTACGCTCACCACAGCTTGCCAGACCAAGAGCCTCCAGTTTAGAACCATTGCCCCTAAAGCCCCAGCCGTCCTCTCATGCCAGTCCCCTTCTCCTCTGCCCGAGGCTCCGGCAGTCAGCCCCAAGTCCATCATCGTTCCAGCGCAGAATTTCGCCTTGATGCAGGTGGCTGGACAGGAGGGGACCTTCTCGCTAGTGGCCTTGTCCCCATCTGTGTCACCGCAGTCAGCACCACCGATTCAGAAAGGCCTGACCTTcccaaaaaacatgaaactgcCCATCCCGAGATACCCGCCTACGAGAAGCAAGCACACTCCGGAAAAAAGTGCCCCGGTTCAGGGTGTTCATGGGCTCACACCCACCAAAACAGTCATGCAACCAAAAGCTGCGGTGCAAACGCAGAGCCCCAACTCCTCAGACACCCACTGTGCTGTAGAGGGGCCTGAGCAGGTTATACTGATTGACTCGGGCTCCTCTGAAATTGCAGTCACCACGTTGTTGTCGGAGAATGCTGTTCTGTATTCTGGGGCTCAGGTGGAGAAGCCTGTGGACCCAGACAAGACACGTTTAGATCCAGCCACTCCCAGCATTCTGCAGAATCTGCAGTTTCGGGCCAGCGCTCCCCGAGAACCACATACTACCACGTCCTTAGCAAGCAGCAGCAGTTCCACAACAAACATAGAAAATGAAGGAGAGAAATTCAGGCAGTGCTTATCAAAGCCAGCTGGACAGTCTACTAGCAGCATCGCTGTCCTCTCGCCCGCAGTCTTTAGCAAGGCCGTTCAGATCATCCCATCGCCTCCTAAAGGTAAGCTGCCCATCCTGCCCTACTCAAAAATGAAGAACACCTATTTGCCAGTGGCTAAACTCAATGTGAAATCCCCTGAGAAGAGCTCTCCTGCAACCCGGCCTGGTCTTGGCAAAGCAACAGATCTCACACCAAGGACTGTTGTAGCTTCTGATCTTTTTTATCAAAAGCAGACACCAAACTGCTTGCAGCACAACCCACCACCGGCAAATCCAAGTAGCCTACCAACTGTGGGATTGGATGCCCTACAGAAGCCAGCAGGCAAGAAAAggggaaggaaaagaaagaccATAGAGGACATACTAGCTTTTGAAGCCAGAAAGAAGAGATCCCTGTCTTTCTTTAGGAGAAGAACTCCAGATAAGCCAAATCTGGTCAATAACACGTCCAAAGACAAAGTTGCAGATATATCGAAGAAGTATCGCAGCATCAGACCAAAGCCTGTGCTTTTAATGGAGGCTGTACCTCAGTTGGTGGGTCTGCCATCCCTCTCAGCTCCCGAGTGCCTGGAGCCGGAGTTTCTCATCAGCCGCAAAACTTCAGAGTGTCAGAAACTGGATCATACGTGTGGCAGAGTGGAAACGCCCAAAGCTGTGGGGTCCAGCTACATGTACCTTGGGAATAAACAGCTGCACAGATGCCCCACCTGCAGCCGCTGCTTTCAGTTCAAACACCACCTCCAAAGCCATATGAACAGCCACACCAACAGCCGTCCCTACCTCTGTCCCATGTGTCGCAAGACATACGCCCACTCGGGCAGCCTGAGCACACACATGAAGCTGCACCACACCGAGGGACGGCCCAGAAAGAGCCTCCGCTGTGAGTTCTGCGAGAAAGCGTTCGGCTACGTGGGGGTCTACTTCAGCCACCTGAAGGAAGTGCACAAAGTAATCCTGACCGTGGAGCCCTCTGTCAGTCACCACGAAGAAGATATTGCTATAGAGGgGGAGATCTCCCCAGGAGCCACTGATGACCAGGGGACGGACCAGGAGGAGCCCGTGGAGCTGCAGATCAAGTGTGGACGCTGTCAAGCCATCACTCCCACCTTCGCCGATATGAAGCTCCACCTGCTGTACGTGCACGGGGAGGAGGTGCAGGTGCGTCTGAAGGAGGGCGTCCtgcaggggggcagggaggcgGAGGACGAGCTGGTCAAACACGCCGCCCACTACTGGAGGACGCTCAACGAGAAGAGGAACCTCGTCAAGTGTGGCAGCTGCCAGGAGGagttcttctccttctccaaaCTCAAGAGGCACATTGACTGTCACCACCAGGACGAGGTGGAGGTGGCAGTGGAGTGTGCCACCGACAGACCGGAGCCTGGGTCGGAGAGTACCGGCTCCACCGAGGCGCACAACAGCGTGGCTCCGAGACTGGGGTCGGCCTTCAACTGCCTCCTGTGCAAAGGCGTTCTGGACAGCAAGGACGCGCTGTTCGAGCACTGGAGAGAGCAGCACAACTGTGAGGAGCCCGCAGTGCTGTGGACCGTGGTGAGCTCGTTTATGGAGCGTGAGCAAATCAACCTTTCCAGTGAAAACCCAGAACAGTAGGAAGCTGTCTGTTCTTATTCtgcacaaacaaaactgtactgtatcctacatttctgaacttggaatgAATAAATTATAGCACAAACAACACACTGCATTGATGCTGCTTGGCTAAGGAGCTGTTTGAGGTGGTTCACAAAGACGCCAAAAGGCCTTCGCTTTTTAGTTTGTCTCTTCTTTAATGTCTTCAGTACAAACGTGAAGTAACGTATTGCCCTACATCTAATAAGCATATTCTTATTAGTAGAAAATGTATGTACCAAAATGTGGACTATATTTTAGTCTGTCTGTTCAGTGCCTAAAAAAAGATGTTTGAAAATACACTGGTAGTTAAGAGATAAGTATGGCAAAGATTACTTTTGTTAAAGAATGCTGAGAGAAAATTGAATATGCTAATAAAACAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40198 lncRNA upstream 434488 8345455 ~ 8347293 (+) False G32130
TU40173 lncRNA upstream 609920 8171645 ~ 8171861 (+) True G32113
TU40100 lncRNA upstream 1160969 7620504 ~ 7620812 (+) True G32048
TU40059 lncRNA upstream 1349837 7431680 ~ 7431944 (+) True G32010
TU40036 lncRNA upstream 1556784 7224632 ~ 7224997 (+) True G31992
TU40344 lncRNA downstream 110300 8895239 ~ 8933746 (+) True G32235
TU40402 lncRNA downstream 378704 9163643 ~ 9222509 (+) True G32268
TU40428 lncRNA downstream 476435 9261374 ~ 9471843 (+) False G32286
TU40431 lncRNA downstream 523698 9308637 ~ 9324063 (+) True G32287
TU40434 lncRNA downstream 564910 9349849 ~ 9352655 (+) True G32290
AMCG00019202 mRNA upstream 175661 8577925 ~ 8606120 (+) True AMCG00019202
AMCG00019200 mRNA upstream 240476 8540613 ~ 8541305 (+) True AMCG00019200
AMCG00019201 mRNA upstream 259927 8497875 ~ 8521854 (+) True AMCG00019201
AMCG00019195 mRNA upstream 319846 8447880 ~ 8461935 (+) True AMCG00019195
AMCG00019196 mRNA upstream 358447 8423146 ~ 8423334 (+) True AMCG00019196
AMCG00019206 mRNA downstream 261979 9046918 ~ 9055856 (+) True AMCG00019206
AMCG00019215 mRNA downstream 551706 9336645 ~ 9348641 (+) False AMCG00019215
AMCG00019214 mRNA downstream 572159 9357098 ~ 9376745 (+) True AMCG00019214
AMCG00019212 mRNA downstream 622362 9407301 ~ 9414186 (+) True AMCG00019212
AMCG00019217 mRNA downstream 841471 9626410 ~ 9628658 (+) True AMCG00019217
TU40197 other upstream 397189 8345455 ~ 8384592 (+) False G32130
TU40199 other upstream 397189 8345455 ~ 8384592 (+) True G32130
TU40051 other upstream 1360698 7420501 ~ 7421083 (+) True G32005
TU39314 other upstream 5571098 3203787 ~ 3210683 (+) False AMCG00019100
TU40426 other downstream 476435 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 544540 9329479 ~ 9348819 (+) True AMCG00019215
TU40438 other downstream 584959 9369898 ~ 9628662 (+) True G32293
TU40734 other downstream 1619700 10404639 ~ 10409497 (+) True G32539
TU41554 other downstream 5654314 14439253 ~ 14486706 (+) True G33159

Expression Profile