RNA id: AMCG00019195


Basic Information

Item Value
RNA id AMCG00019195
length 3270
RNA type mRNA
GC content 0.48
exon number 14
gene id AMCG00019195
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 8447880 ~ 8461935 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCTCATCCATGCTTGGGTTTGGCCTCCTGGTCTGTAGAATTAAGGTGGATGAGCACCATCTCCAGCGGGCGATTTCGGCGCAGCAGGTTTACGGAGAGAAGCGGGATAATATGGTTATTCCGGTTCCAGAGGCAGAAAGCAACATTGCCTACTATGAATCTCTCTACCCTGGGGAGTTCAAGATGCCAAAGCAGCTCATTCACATACAGCCTTTCAGCCTGGATGCTGAGCAGCCGGACTACGACTTGGATTCGGAGGATGAGGCGTTTGTGAATAAGCTGAAGAAGAAGATGGAGATCACTCCTCTGCAGTTTGAGGAGATGATTGACCGGCTGGAAAAGGGCAGTGGACAGCAGCTGGTGACTCTCCAGGAGGCCAAGCTGCTGCTGAAGGAGGACGACGAGCTGATCCGCGAGGTGTTCGAGTACTGGACGCGCAAGAGGAAAGGCTGCAAGAGCGCCTCCCTCATCCCCTTGGTGAAGCAGGAGAAGCGGGATGGCTCGAGCACCAACGACCCCTACGTCGCCTTCCGCAGGAGGACGGAGAAGATGCAGACGCGCAAGAATCGGAAGAACGATGAGGCATCGTATGAGAAAATGCTGAAGCTGCGGAGAGATCTGAGCCGAGCAGTGACCATCCTGGAGATGAttaagaggagagagaagagtaAAAGAGAGCTGCTGCACTTGACACTGGAGATCATAGAGAAGAGGTACAGTATAGCGGACTTTGGTGGTGAGATTATGGCCGAGGTGTTGGCTCAGCGACAGCTAGTGAAACCGACGTACACAATGCCAATCATTCCCCTATCAAATCAGTTCAAGCACCAGGATCACCTGGAGCTTAAAGAATACAAACCTAAGCCAGAGAAGACGGAAGTTGTCAGAACAAAAAGGAAGTATGAGAAGAAGCCCAAAGTCTTACCTTTATCTACTTCGGCTGTTCCTCAGCAATCAGGTCCCTCTGTACTGCCAGTCTTCAATCCTAAGGACTTAAATCAGTACGACTTCCCCAGCTCCGATGAAGAACCCTTCTCCCAGATTCATTCAGGTTCCTCAGAAGCTGAGGAAGAAAATGACCCAGATGGTCCATTTGCTTTCCGTAGGAAGGCAGGCTGTCAATATTATGCTTCTAGGTTGGACCAAACTGGCAATTGGCCCTGGTGTAGTCCCTCGGAGGGAGGTCTGGGAGATGTACGCTACAGATACTGCCTCACGACGCTCTCTGTTCCCCGCCGCTGCGTGGGGTTTGCACGGCGGCGCATCGGGCGAGGTGGCAGGGTCTTGTTGGACAGACTACACACGGACTTTGACAATGTATTTCATCGGCTGGATCCGGAAATGCTTGCCTCTCCGCCACTCTCTCCAGTTGACAAGATTGCCAGTACCTCAGAAACAAATACCTCGGACAGAAATCCTTCTAGAGACCTCAGTCAGATATTATTGAACATTAAATCATGTAGATGGAGACATTTTAGGCCCCGGACACTACCACTACATGATACAGACAGTGTAGAAGTCTCCTCAAGGAAACTGTACAGGGGTTTGACTCGGACATCCTCGGCACAACCTGGGACCCAGGCTGGCGGTACCTCTACCCAAAATAGAAGTGGGGTTGGCTCCACACCCATTGCTGCATTCACAGCAGAACAATACCAGCAACATCAGCAGCAGCTCGCACTGATGCAGAAACAGCAACTCGCACAGATCCAGCAGCAACAGGCCAATAATGTCTCTGCCACCAACAGTACACAGGGTTTGGTATCAAAGACATTGGATTCCCAGTTTGCCCAGTATGCTGCCTCTGCTTTGGTGACGACAGAACAGCTCATGTCATTTAAGCCGAAGGAAGAGGTGGTGCTGGGAATCGGAGTCAATGGTATCCTTCAGGCCTCAGGAGTATACAAGGGCTTACACCTCACTAGCTCCGCACCTACTGCACTTGTACACACAAGCCAGTCGACGACGGCGGTGGGTTCTACCTTTCTCCAGCCCTCCAACAACACACAGACTTCAAGTTCCCACAGTGCGCTGAGTCACCACGGGACTGCCGCCAACTCCACAACTCAGGTCCTGATCGGGAATAACATCCGGCTGAGCATGCCCTCGTCAGGGGGGGCGGTGAACTCGATCGCCACTCTGAACGCACGGCATATACCGAGGACTATAAACACGGTTCCCTCATCTGCCTTAAAGTTGGCTGCAACGACCAACTGTCAAATGCCCAAGGTGACCGCCTCGTCCTCCATGGATATAGTACCGAGGGAAAACCATGATAAAGAAAAGCCAGCACTAAACAGTATAGCGGACAATACAGTGGCCATGGAAGTCACGTAGTGCCTGTGGGCAGGACCTCGGCGTGGGAACCCGTTCAGGTGctatgcatcggtagcattgtGAGTGCAAGGGATGGCGGAATGCAGCACATtgtgtttccatggcaactGCTGGGACTTAATTGCAATGCTCATCtcatgctttcattttttatttgttactgtTAATAAGAGGAATCAACATCTGTAAATTATGAATATGGCaattatatgtacagtactgcaTATTTGTAATACCCTTGTATATACGTTACTTGAATACAGAACTGTTCATTTGTGATGTTTTGCACTTgggaaaaatgacaaaaaaaaaaaaaaaattgcaactGGTAAGAGTGTGAGATGTGAGAGTTGTATAGAGATGAAATGTCATCACATCATGTGCATGGTGCGGACCCTGctgttttatctatttattgtgCTGTGTTTACAGTTTCTTTGTACACTGTACCTTCATTGGTTCCTGTGCTGTAGTAAATGTGTTAGGTAGCTATGGACTCCTCggtattttgtatattgtgaaCATAACTAGGTTCCCCTTTGGGTCCCTGAGTTTTCTGTGTATCATGTGGAATTAATGGTGACATACATACAGaattgggggggaggggggggaaaggCATCGGTTTGCTATTACTTACTGGGATCTTCCATTTGTATTGTCCCAAGACAAGTAACAAACTAGGGGTGAAGTCTCTTCCCAGAAGCCAGTGAAGCTTCTGATTAAGcactatttttgttattgttttaattgttgctgcttttatataatttgtcCCTAGTTTTTCATGAAAATGGAGTCCCggatacattttctttgctatttttttaatagctCTTAcctcccttttttcttttgtaaaaatgttcagaaagAATATGgagttatttttgtatctttttttttttttttttttttttccgttctTGT

Function

GO:

id name namespace
GO:0035267 NuA4 histone acetyltransferase complex cellular_component

KEGG:

id description
K11322 EPC; enhancer of polycomb-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40198 lncRNA upstream 100587 8345455 ~ 8347293 (+) False G32130
TU40173 lncRNA upstream 276019 8171645 ~ 8171861 (+) True G32113
TU40100 lncRNA upstream 827068 7620504 ~ 7620812 (+) True G32048
TU40059 lncRNA upstream 1015936 7431680 ~ 7431944 (+) True G32010
TU40036 lncRNA upstream 1222883 7224632 ~ 7224997 (+) True G31992
TU40344 lncRNA downstream 433304 8895239 ~ 8933746 (+) True G32235
TU40402 lncRNA downstream 701708 9163643 ~ 9222509 (+) True G32268
TU40428 lncRNA downstream 799439 9261374 ~ 9471843 (+) False G32286
TU40431 lncRNA downstream 846702 9308637 ~ 9324063 (+) True G32287
TU40434 lncRNA downstream 887914 9349849 ~ 9352655 (+) True G32290
AMCG00019196 mRNA upstream 24546 8423146 ~ 8423334 (+) True AMCG00019196
AMCG00019199 mRNA upstream 45987 8373800 ~ 8401893 (+) True AMCG00019199
AMCG00019198 mRNA upstream 101428 8337221 ~ 8346452 (+) True AMCG00019198
AMCG00019197 mRNA upstream 125052 8308993 ~ 8322828 (+) True AMCG00019197
AMCG00019194 mRNA upstream 149114 8289074 ~ 8298766 (+) True AMCG00019194
AMCG00019201 mRNA downstream 35940 8497875 ~ 8521854 (+) True AMCG00019201
AMCG00019200 mRNA downstream 78678 8540613 ~ 8541305 (+) True AMCG00019200
AMCG00019202 mRNA downstream 115990 8577925 ~ 8606120 (+) True AMCG00019202
AMCG00019205 mRNA downstream 319846 8781781 ~ 8784939 (+) True AMCG00019205
AMCG00019206 mRNA downstream 584983 9046918 ~ 9055856 (+) True AMCG00019206
TU40197 other upstream 63288 8345455 ~ 8384592 (+) False G32130
TU40199 other upstream 63288 8345455 ~ 8384592 (+) True G32130
TU40051 other upstream 1026797 7420501 ~ 7421083 (+) True G32005
TU39314 other upstream 5237197 3203787 ~ 3210683 (+) False AMCG00019100
TU40426 other downstream 799439 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 867544 9329479 ~ 9348819 (+) True AMCG00019215
TU40438 other downstream 907963 9369898 ~ 9628662 (+) True G32293
TU40734 other downstream 1942704 10404639 ~ 10409497 (+) True G32539
TU41554 other downstream 5977318 14439253 ~ 14486706 (+) True G33159

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00009685 True 2391 mRNA 0.55 14 NC_007123.7 41420355 ~ 41468926 (+)
grasscarp (Ctenopharyngodon idella) CI01000152_00839499_00856309.mRNA True 2328 mRNA 0.56 13 CI01000152 839499 ~ 856309 (+)
eurasian perch (Perca fluviatilis) TU162708 False 539 lncRNA 0.51 4 NC_053122.1 37263316 ~ 37293476 (-)