RNA id: AMCG00019199


Basic Information

Item Value
RNA id AMCG00019199
length 3906
RNA type mRNA
GC content 0.51
exon number 24
gene id AMCG00019199
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 8373800 ~ 8401893 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAATGAATGTATAAAAGCAAACGCAAAGTCTTGTGGGGAGTGTATTCAAGTTGGAGAAAAATGTGGATGGTGCACCAAACCTGACTTCTTAAAACAAGGCGAGCCGACCTCTGCCAGATTCCCTGAAGAAGCGCTGTCCGCACGACTTAATCGAGAACCCCCGGGGCAGCCAGACGGTGCTCGTCAACAAGCCAgtGAAGCACAGTCATTTAATCTAACTTTCAAAAGAGCTGAAGACTATCCTATTGATCTGTATTACCTTATGGACCTTTCCTACTCCATGAAGGATGACTTGGAAAACGTCAAAAATCTGGGAACAATGCTGATGCATGAAATGTCAAAAATCACCAGCGATTTTAGAATTGgTTTTGGCTCCTTTGTGGAGAAGACTGTGATGCCCTATATTAGCACAACTCCAGCCAAGCTGTTGAACCCTTGCACTGGTGACCAGAATTGCACTAGCCCTTTCAGCTATAAAAATGTGCTCCGATTGACCAGTGATGGAAACCAGTTCAACACTCTTGTAGGGCAGCAGCAGATTTCTGGAAACTTGGATTCTCCTGAAGGAGGGTTTGATGCCATTATGCAAGTTGCTGTCTGTGGAGAGCACATTGGCTGGAGGAATGTCACCCGCCTGTTGGTGTTTTCCACTGACGCTGGCTTCCACTTCGCTGGAGATGGAAAACTGGGTGGAATAGTTTTGCCAAATGATGGGAAATGCCACTTGAAAGATGGGATGTACACAATGAGCCAttactatgacTATCCCTCAATTGCACATCTAGTGCAGAAACTGAGTGACAACAACATTCAAACGATCTTCGCCGTCACTGAAGAATTCCAGTCTGTTTACAAGGAACTGAAGAACCTCATTCCAAAATCTGCTGTAGGAACCCTTTCTGCCAACTCCAGCAACGTGATAAATCTGATTATTGATGCTTATAAGtgcagggcATTTCAAACTGGAGAGAAGAAGGACACCTGCGAGAGAGACTGCTCCTATTTCAACCTCATCAAGGTGAAGGACCGTGATAAGTTGCCCCAGCCAAACCAGGCCTTTCCCCTCATGCACTGCAAGGAGAGAGACGCCAATGACTGCTGGTTCTATTACACCTACGCCATCAACAACACCGAAAAAGAAGTCCACGTGTGCCCTGCAGGGCCGGATATCATCCCAATTGTTGCCGGAGTGGTGGCAGGCATTGTGCTCATAGGCCTGGCCCTGCTGCTCATCTGGAAATTGCTGATGATCATCCACGACCGGAGAGAGTTTGCCAAGTTCGAGAAGGAGAAGATGAATGCCAAGTGGGACACGAACTTCACAGGAGCCGGGCTGCTGGTGTCCGGGCGCTGTGACAGTGTGCCGGGCCTTGTGCAGAAGGGCTGCCCAGAGGCCCAGATTGAAAACCCCAGGGGCTCCACTGTGGTGCAGCAGAATGACAATGTCACAGCTCGCCGCCGAGGGGAGGAGGCGAAGCCACGCAAAATCACACAGCTACAGCCCCAGAAACTGCTCTTAAACCTGCGTATAGGGGAACCCCAGACCTTTGAGGTGAAGTTCAAAAGAGTGGAGGATTATCCTATTGACCTGTACTACCTTATGGACCTCTCCTACTCCATGGAAGATGATTTGGTTAATATTAAAAGGCTGGGCACTGATCTGATGAGTGAAATGAGGAACATCACAGATGACTTTAGGATTGACATGCTGGAGAATCCGTGCAAGAGGAAAGAGGCCTGTGCGAGGCCCTTCAGCTTTCAAAACGTCCTCAGCCTGACGGAGAACGGAAGTCTTTTCAATGAGCTGGTGGGGAGGCAGCGTATTTCAGGAAACCTGGACTCCCCTGAGGGAGGCTTCGATGCTTTGATGCAGGCAGCAGTGTGTGAGGAGGACATTGGCTGGAGGAATGTCACCCGCCTGTTGGTGTTCTCCACCGACGCTGGCTTCCACTTCGCTGGAGACGGAAAACTGGGTGGAATAGTTTTGCCCAATGATGGAAAGTGTCAcctgaaaaacaacatgtacaCGATGGGTCCATATCGGGACTATCCGTCTGTCGGTCATCTCGCCCAGAAGTTAAGTGAGAGTAACATTCAGACCATCTTTGCCGTAACCCAGGATGTTCTGCCTGTATATGAGAGCTTGCAGTACCTCTTACCAAAGTCTGCAGTCGGGATTCTCTCAAACAACTCCCATAACGTACTGCAGCTGATCATTGATGCCTATAGTGCCCTCACATCAGAAATCCTCATGGAGAACAGCAGATTACCTGAGGGTTTCCAGATCAGTTACACCACACTCTGCAAAGACAACAGGAGCCGGTCTGGGGAAGAGGGCCGGAAATGCGCCAACATTTCATTCGGCGACGAGGTGACATTTACCATAAGCATTGTTGCACACAAGTGTCCGAGAGGTACCGATGACTTCCGAGTCGCATTCAAAGCTCAGGGTTTCAGTGAGGAGGTGGAAGTTGTCCTGAAGCCAATCTGTCAGTGCGAGTGTCACAAGGACAGAGTTCCACACAGCCCCAAGTGTAATAATGGCAGTGGGGCCTATGAATGTGGGATCTGCAGGTGCAACGCCGGTCATGTTGGTAGCTTCTGTGAGTGCGACACCGATGAAGCCAACGCCATCCATATGCTGGACTCCTGCAGGAAGGACAACGGCTCAGAGACCTGCAGCTCGAACGGGGAGTGTGTGTGCGGCCGCTGTGTGTGCCACAAGAGCAGGAGAAATCCCAGCCACCTCTACTATGGCAAATACTGTGAATGTGATAACTTCAGATGTGACCAGCATCAGGGCTTGATCTGTGGAGGCCAAGGGCAGTGCGATTGCGGCGTGTGTAAGTGCTTCCCAGGGTTTGCTGGAGACGCCTGCGATTGCCCTCTGAGCACcgccacgtgccaggccaggacAGGCCAGCTGTGCAACGGCAGGGGGAACTGCACCTGTGGGGTGTGCGTCTGCAGCGACAGTCGATTCCAGGGGCCCACCTGTGAGATATGCCCCACGTGCTCAGATGTGTGTGCTGTACACAGGGATTGTGTTCTGTGCAGGGTCTTCAACGGGGGCTTGAGGCAGGAGGACTGTGAGAGGCAATGCAGTCACTTGAACATCACCCTGGTACAGGAGAGTGCCAACCTGCCACGAGCACACCACAGCGGTGGCCTACAGAAGTGCAGGGAGAAGGACGAGGACAGCTGCTGGGTCCACTTTGTGTATCAAGATGAGCACACAATCCAACACCCGCAGGTTCATGTCGCTAAAAAACGAGAGTGTCCCTCGGGCCCAGATGTCCTGCTCATCATCGGGGTGCTGAGCGGCTCCATCGTGCTCGTTGGAGTGGCCCTGCTCATCATCTGGAAACTGGTCACTACCATCCATGACAAGAGAGAGTTTGCCAAGTTCCAGAAAGAGATCGTAGACACCAAGTGGGATATGGAGGATTCAGATATCAGCAGTATTTGCTTCTCCTCCCTCTGTTTTGCTGACAGGGTCATTTTTAAGATCAGCGTGGAAAATGTTGCAAGCGGTGTGCAGGTCGATCTTACGGTAACGGATGTGTTTGCAGATGTTGAAGTTAATTGGTGGCACACAGAAGCCACACTGTCCGTACTGACAATCTCTGGTCTGCCCGCCTGCGGCCGCCTCCCCCCTCCTGATGAGAAGAGAGTAGAAGCAAGCAGGGATGTAGGAGACAAGAGCAAGTGCCAGGACTGTGAAAAGACACCATCAGGCGAACAGGCTGTGTCACATCAGTGGTGTCTTTGTGAAGAGCAGCAGttagagaggggagaggagctCTTCAGAGCAGAGACAGCAGCTGAAAAtacacagagaggaggaggcACTCCTGCAACACACGATGACAGTCAATACATGAACAGAGATAAAGGGCAACAA

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0016020 membrane cellular_component
GO:0046982 protein heterodimerization activity molecular_function
GO:0001968 fibronectin binding molecular_function

KEGG:

id description
K05719 ITGB1, CD29; integrin beta 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40198 lncRNA upstream 26507 8345455 ~ 8347293 (+) False G32130
TU40173 lncRNA upstream 201939 8171645 ~ 8171861 (+) True G32113
TU40100 lncRNA upstream 752988 7620504 ~ 7620812 (+) True G32048
TU40059 lncRNA upstream 941856 7431680 ~ 7431944 (+) True G32010
TU40036 lncRNA upstream 1148803 7224632 ~ 7224997 (+) True G31992
TU40344 lncRNA downstream 493346 8895239 ~ 8933746 (+) True G32235
TU40402 lncRNA downstream 761750 9163643 ~ 9222509 (+) True G32268
TU40428 lncRNA downstream 859481 9261374 ~ 9471843 (+) False G32286
TU40431 lncRNA downstream 906744 9308637 ~ 9324063 (+) True G32287
TU40434 lncRNA downstream 947956 9349849 ~ 9352655 (+) True G32290
AMCG00019198 mRNA upstream 27348 8337221 ~ 8346452 (+) True AMCG00019198
AMCG00019197 mRNA upstream 50972 8308993 ~ 8322828 (+) True AMCG00019197
AMCG00019194 mRNA upstream 75034 8289074 ~ 8298766 (+) True AMCG00019194
AMCG00019193 mRNA upstream 345073 8014532 ~ 8028727 (+) True AMCG00019193
AMCG00019192 mRNA upstream 390132 7983197 ~ 7983668 (+) True AMCG00019192
AMCG00019196 mRNA downstream 21253 8423146 ~ 8423334 (+) True AMCG00019196
AMCG00019195 mRNA downstream 45987 8447880 ~ 8461935 (+) True AMCG00019195
AMCG00019201 mRNA downstream 95982 8497875 ~ 8521854 (+) True AMCG00019201
AMCG00019200 mRNA downstream 138720 8540613 ~ 8541305 (+) True AMCG00019200
AMCG00019202 mRNA downstream 176032 8577925 ~ 8606120 (+) True AMCG00019202
TU40051 other upstream 952717 7420501 ~ 7421083 (+) True G32005
TU39314 other upstream 5163117 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 5163117 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 5277374 3094478 ~ 3096426 (+) False AMCG00019096
TU38960 other upstream 6226237 2143921 ~ 2147563 (+) True G31110
TU40426 other downstream 859481 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 927586 9329479 ~ 9348819 (+) True AMCG00019215
TU40438 other downstream 968005 9369898 ~ 9628662 (+) True G32293
TU40734 other downstream 2002746 10404639 ~ 10409497 (+) True G32539
TU41554 other downstream 6037360 14439253 ~ 14486706 (+) True G33159

Expression Profile