RNA id: AMCG00019198


Basic Information

Item Value
RNA id AMCG00019198
length 1542
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00019198
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 8337221 ~ 8346452 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGTGACGGTCAACACAGTACTGTACACGGCGATCGATCAGCTGGGCAGGATCAGACTAGAGTGTAAAGCTCTGGATTTAGCACTGGCCCAGAGGGACGGGGCTGTAAATACAACACTGGTAATAAACTACAAAGGAAATGAATGTATAATGGCAAGAGCAAAGTCTTGTGGGGAGTGTATTCAAGTTGGAGAAAAATGTGGATGGTGCACCAAACCCCACTTTTTAAGACGAGGAGAGCCGACCTCTGCCAGATGCGATGAACTGGAGTCCCTGAAGAAGCGCTGTCCGCACGACTTAATCGAGAACCCCCGGGGCAGCCAGACGGTGCTCGTCAACAAGCCAGTGACCAACAGGAAGGAGACCTCTGAGAAAATGAAACCAGAGGATATCACTCAGATTCAGCCTCAGAAGATGTCTTTGAACTTACGACCCgatgaAGCCCAGTCATTAAAGCTGAATTTCAGAAGAACTGAAGATTATCCTATTGATCTGTATTATCTTATGCACCTTTCTTCCTCCAAGGATGatttggaaaatataaaaaatctgGGAACAAGTCTGATGCATGAAATGTCAAAATTCACcagtgattttagaattgGTTTTGGCTCTGTGGAGAAGACTGAGGTGCCCCACATTGGTACATCTCCAGCCAAGCTGCTGAACCCTTGCACTGGGGACCATAACAGTACCAGTGCTTTCATCTATAAAAATGTGCTCCAATTGACCAGTGATGGAAACCAGTTCAACACTCTTGTAGGGCAGCAGCAGATTTCTGAAAACTTGGATTCTCCTGAAGGAGGGTTTGATGCCATTATGCAAGTTGCTGTCTGTGGAgAGCACATTGGCTGGAGGAATGTCACCCGCCTGTTGGTGTTCTCCACTGACGCTGGCTTCCACTTCGCTGGAGATGGAAAACTGGGTGAAATAGTTTTGTCAGATGATGGAAAATGTCACCTGAAAGATGGGATGTGCACAATAAGccattattatgACAATCCCTCAATTGCACATCTGGCTCAGAAACTGAGTGACAACAACATTCAAACGATCTTTGCCGTCACTGAAGAATTCCAGCACGTTTACAAGGAACTGAAAAACCTCATTCCAAAATCTGCTGTCGGAATCCTCTCTGCCAACTCCAGCAACGTGATCAATCTGATTATTGATGCCTATAAGtcTCTGTCTTCGGAGGTCATCCTGGAGAACAGTAAATTGCCAGAAGGAGTGACCATTAAGTATCAGTCACATTGCAAGAATGGGGTTGTCAATGAAGGAGAAAATGGTCGAAAGTGTTCTAACATTTCCATTGGTGACCAGtgcagggcATTTCAAACTGGAGAGAAGAAGGACACCTGCGAGAGAGACTGCTCCTATTTCAACCTCATCAAGGTGAAGGACCGTGATGAGTTGCCCCAGCCAAACCAGGCCTTTCCCCTCATGCACTGCAAGGAGAGAGACGCCAATGACTGCTGGTTCTATTACACCTACGCCATCAACAACACCGAAAAAGAAGTCCACGTGGTGGAGATTCAA

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0046982 protein heterodimerization activity molecular_function
GO:0001968 fibronectin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40173 lncRNA upstream 165360 8171645 ~ 8171861 (+) True G32113
TU40100 lncRNA upstream 716409 7620504 ~ 7620812 (+) True G32048
TU40059 lncRNA upstream 905277 7431680 ~ 7431944 (+) True G32010
TU40036 lncRNA upstream 1112224 7224632 ~ 7224997 (+) True G31992
TU39986 lncRNA upstream 1517186 6819765 ~ 6820035 (+) True G31947
TU40344 lncRNA downstream 548787 8895239 ~ 8933746 (+) True G32235
TU40402 lncRNA downstream 817191 9163643 ~ 9222509 (+) True G32268
TU40428 lncRNA downstream 914922 9261374 ~ 9471843 (+) False G32286
TU40431 lncRNA downstream 962185 9308637 ~ 9324063 (+) True G32287
TU40434 lncRNA downstream 1003397 9349849 ~ 9352655 (+) True G32290
AMCG00019197 mRNA upstream 14393 8308993 ~ 8322828 (+) True AMCG00019197
AMCG00019194 mRNA upstream 38455 8289074 ~ 8298766 (+) True AMCG00019194
AMCG00019193 mRNA upstream 308494 8014532 ~ 8028727 (+) True AMCG00019193
AMCG00019192 mRNA upstream 353553 7983197 ~ 7983668 (+) True AMCG00019192
AMCG00019191 mRNA upstream 373045 7949498 ~ 7964176 (+) True AMCG00019191
AMCG00019199 mRNA downstream 27348 8373800 ~ 8401893 (+) True AMCG00019199
AMCG00019196 mRNA downstream 76694 8423146 ~ 8423334 (+) True AMCG00019196
AMCG00019195 mRNA downstream 101428 8447880 ~ 8461935 (+) True AMCG00019195
AMCG00019201 mRNA downstream 151423 8497875 ~ 8521854 (+) True AMCG00019201
AMCG00019200 mRNA downstream 194161 8540613 ~ 8541305 (+) True AMCG00019200
TU40051 other upstream 916138 7420501 ~ 7421083 (+) True G32005
TU39314 other upstream 5126538 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 5126538 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 5240795 3094478 ~ 3096426 (+) False AMCG00019096
TU38960 other upstream 6189658 2143921 ~ 2147563 (+) True G31110
TU40426 other downstream 914922 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 983027 9329479 ~ 9348819 (+) True AMCG00019215
TU40438 other downstream 1023446 9369898 ~ 9628662 (+) True G32293
TU40734 other downstream 2058187 10404639 ~ 10409497 (+) True G32539
TU41554 other downstream 6092801 14439253 ~ 14486706 (+) True G33159

Expression Profile