RNA id: AMCG00019201


Basic Information

Item Value
RNA id AMCG00019201
length 2937
RNA type mRNA
GC content 0.54
exon number 20
gene id AMCG00019201
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 8497875 ~ 8521854 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTAGCTGGTATTGACGAAACAGATATTTTTGGGTTTCACATGTTGACGTGCATCCTCTGCTAAAACTTTCTCCTTTGGCACAGGTGTGCACCGCTGCTCCCCGGATCGCTGGCCCTCCGTGGCTCTTGCAGGGGCCGCCCGGACCCGCCGCCGGCTGCGGGGCGCTGATCGCGGCGGCGCTCTCTGCAGAGGTGACGTCACCAGCCACCCCAGCCCGACcgactgagggagagagaggcgcCGGTGTCATGGCTGCCATGTTGGAGAGGAAGTGATTCCTATCCGCCTAAGAAAAGGGGGCATTTTGCTTTGACTACCGACGAACGGAGTGATCTTACGACACTCGGCGAAGGTTGAGGGGTGCGGCCTCCGTTTTCCTATCCCAGGGCGGCTGCGGGAGCAGGATCTGCTCGCTAGTGTTGTCGGTGTGAGCGCAGAGAGGGGAAGATGGCGGACCCGGCGGAGTGCACCATCAAAGTGATGTGCCGTTTCAGGCCCTTGAATGGATCCGAGGTGATGAGGGGAGACAAATACATCCCCAAGTTTCAAGGGGAAGACAACGTTGTCATCGCGGGTAAACCATATATGTTTGATCGAGTCTTCCAGTCAAGTACTACACAAGAGCAAGTGTACAATGCATGTGCCCAGAAGATTGTCAAAGATGAAATGGGGATCATCCCAAGAATAGTCCAagacattttcaattacatttactcCATGGATGAAAACTTGGAGTTTCATATCAAGGTCAGTAAAACCGGAGCAGAAGGAGCTGTGCTCGACGAAGCGAAAAACATCAATAAGTCTTTGTCATCGCTTGGAAATGTCATCTCGGCCCTGGCGGAAGGCACTaCATATATTCCGTACAGAGACAGTAAAATGACACGAATTCTTCAAGATTCCCTCGGCGGAAACTGCAGGACCACCATCGTCATCTGCTGCTCCCCATCCTCCTACAATGAAGCGGAGACCAAGTCAACGCTGATGTTTGGCCAGAGAGCCAAGACCATTAAGAAcactgtgtgtgtcaatgtggaGCTCACAGCAGAACAGTGGAAGAAGAAGTatgaaagagagaaggagaagaacaAGACCTTAAGGAACACCATTCAGTGGCTTGAGAACGAGCTCAACAGATGGCGTAACGGTGAAAGCGTGCCCGTTGACGAGCAGTTTGACAAGGAGAAGGCCAATGCAGAGTTCCTGGCTCTGGACAATGTGGTCAACAATGAGAAGCCGGCTCCCTCGCCCGGGATCCCAGGGGTGAAGCTCACCGATGCCGAGAGAGCCAAGTGTGAAGTCGAGATCGCAAAACTGTACAAACAGTTGGATGACAAGGATGACGAGATCAACCAACAGAGCCAGTTGGCAGAGAAACTGAAGCAACAGATGCTGGATCAGGAGGAGCTCCTGGCCTCCTCCCGACGCGACCACGACAACCTACAGGCCGAGCTGAACCGGCTGCAGTCCGAGAACGAGGCCTCTAAGGAGGAGGTGAAGGAGGTGCTGCAGGCCCTGGAAGAGCTAGCGGTCAACTACGATCAGAAGTCCCAGGAGGTGGAGGACAAGACCAAGGAGTTCGAGATGCTTAGCGAGGAGCTGAACCAGAAATCGACCATTCTGGCATCAATTGACTCTGAGCTTCAGAAACTTAAGGAAATGACAAACCACCAAAAGAAGAGAGTCACCGAAATGATGTCCTCTCTGCTCAAAGATCTGACCGAAATAGGCATTGCAGTTGGCAGTAATGATATCAAGCAACATGAGGGCAGTGGCCTGATCGACGAGGAGTTTACTGTGGCCCGCCTGTACATCAGCAAAATGAAATCGGAGGTGAAGTCCATGGTGAAGCGCTGCAAGCAGCTGGAGGGCACCCAGGCCGAGAGCAACAAGAAGATGGATGAGAATGAGAAAGAGCTGGCGGCCTGTCAGCTCCGCATCTCGCAGCATGAAGCCAAGATCAAGTCTCTGACGGAGTACCTGCAGAACGTGGAGCAGAAGAAGAGGCACCTGGAGGAGTCGGTGGACTCTCTCAACGAGGAGCTGGTGAAGATCAATGCACAGGagaAAGTCCATGCCATGGAAAAGGAGAATGAAATCCAGACGGCCAATGAAGTCAAGGAGGCCGTAGAGCAGCAGATCCAGAGTCACCGGGAGGCCCATCACAAGCAGATCAGCAGCCTGCGGGACGAGTTGGACAAGAAGGAGAAGCTCATCACCGAACTCCAGGATTTGAACCAGAAAATCATGCTGGAGCAGGAGCGCCTGCGCGTGGAGCACGAAAAGCTCAAGTCCACAGACCAGGAGAAGAGCCGCAAGCTGCATGAGCTCACGGTTATGCAGGACAGAAGAGAGCAGGCCAGGCAGGATCTCAAAGGGTTGGAGGAGACGGTGGCAAAGGAGCTCCAGACTCTGCACAATCTTAGGAAATTGTTTGTTCAGGATTTGGCAACCAGAGTTAAGAAGAGTGCTGAGATGGACTCTGACGACACCGGGGGCAGCGCTGCTCAGAAACAGAAAATCTCCTTTCTTGAGAACAACCTGGAACAGCTCACCAAGGTCCATAAACAGCTGGTACGTGACAATGCAGATCTGCGTTGTGAGCTTCCTAAACTGGAAAAACGTCTTCGGGCTACAGCTGAGAGAGTTAAGGCCCTGGAGTCGGCACTGAAGGAAGCCAAAGAGAACGCGGCTCGCGACCGCAAGCGCTACCAGCAAGAGGTGGACCGCATCAAGGAGGCTGTGAGGGCCAAGAACATGGCCAGGAGGGGCCACTCCGCACAGATCGCCAAACCTATTCGCCCGGGCCAGCCTCCGGTGGCTTCCCCGACTCACCCAAATGTCAACCGCAGCGGAGGGAGCTTCTACCAGAACAGCCAGACCGTGGCGATCCGTGGAGGTGGAGGAATGAAACAGGATAAGAAGTCAGTATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40198 lncRNA upstream 150582 8345455 ~ 8347293 (+) False G32130
TU40173 lncRNA upstream 326014 8171645 ~ 8171861 (+) True G32113
TU40100 lncRNA upstream 877063 7620504 ~ 7620812 (+) True G32048
TU40059 lncRNA upstream 1065931 7431680 ~ 7431944 (+) True G32010
TU40036 lncRNA upstream 1272878 7224632 ~ 7224997 (+) True G31992
TU40344 lncRNA downstream 373385 8895239 ~ 8933746 (+) True G32235
TU40402 lncRNA downstream 641789 9163643 ~ 9222509 (+) True G32268
TU40428 lncRNA downstream 739520 9261374 ~ 9471843 (+) False G32286
TU40431 lncRNA downstream 786783 9308637 ~ 9324063 (+) True G32287
TU40434 lncRNA downstream 827995 9349849 ~ 9352655 (+) True G32290
AMCG00019195 mRNA upstream 35940 8447880 ~ 8461935 (+) True AMCG00019195
AMCG00019196 mRNA upstream 74541 8423146 ~ 8423334 (+) True AMCG00019196
AMCG00019199 mRNA upstream 95982 8373800 ~ 8401893 (+) True AMCG00019199
AMCG00019198 mRNA upstream 151423 8337221 ~ 8346452 (+) True AMCG00019198
AMCG00019197 mRNA upstream 175047 8308993 ~ 8322828 (+) True AMCG00019197
AMCG00019200 mRNA downstream 18759 8540613 ~ 8541305 (+) True AMCG00019200
AMCG00019202 mRNA downstream 56071 8577925 ~ 8606120 (+) True AMCG00019202
AMCG00019205 mRNA downstream 259927 8781781 ~ 8784939 (+) True AMCG00019205
AMCG00019206 mRNA downstream 525064 9046918 ~ 9055856 (+) True AMCG00019206
AMCG00019215 mRNA downstream 814791 9336645 ~ 9348641 (+) False AMCG00019215
TU40197 other upstream 113283 8345455 ~ 8384592 (+) False G32130
TU40199 other upstream 113283 8345455 ~ 8384592 (+) True G32130
TU40051 other upstream 1076792 7420501 ~ 7421083 (+) True G32005
TU39314 other upstream 5287192 3203787 ~ 3210683 (+) False AMCG00019100
TU40426 other downstream 739520 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 807625 9329479 ~ 9348819 (+) True AMCG00019215
TU40438 other downstream 848044 9369898 ~ 9628662 (+) True G32293
TU40734 other downstream 1882785 10404639 ~ 10409497 (+) True G32539
TU41554 other downstream 5917399 14439253 ~ 14486706 (+) True G33159

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00009688 False 3122 mRNA 0.50 24 NC_007123.7 41510492 ~ 41551599 (+)
grasscarp (Ctenopharyngodon idella) CI01000152_00931110_00939265.mRNA True 1336 mRNA 0.47 9 CI01000152 931110 ~ 939265 (-)