RNA id: TU109467


Basic Information

Item Value
RNA id TU109467
length 262
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G87704
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25529324 ~ 25529585 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtcttgaccacactgcaccaagctaccttcagtcactcgtctctccatacatcccctccagaccactgcgctcctccagtgccagaaggctaactctgcctcctctgcactctccttcctccagagccactccttctcatccctgaccctaaatggtggaacgacctgcccactgaagtcaaaacagcagagtccttgacctcattccggtgcttactcaagacacatcttttccgacagtacttgtaatattagtcctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109409 lncRNA upstream 156985 25366975 ~ 25372339 (+) True AMCG00021682
TU109347 lncRNA upstream 593498 24934423 ~ 24935826 (+) False AMCG00021676
TU109237 lncRNA upstream 1168415 24359504 ~ 24360909 (+) True G87525
TU109188 lncRNA upstream 1267707 24260962 ~ 24261617 (+) True G87482
TU109160 lncRNA upstream 1310500 24216374 ~ 24218824 (+) True G87464
TU109518 lncRNA downstream 223468 25753053 ~ 25753253 (+) False AMCG00021692
TU109541 lncRNA downstream 302869 25832454 ~ 25832988 (+) True G87765
TU109559 lncRNA downstream 329364 25858949 ~ 25870195 (+) True AMCG00021693
TU109567 lncRNA downstream 355861 25885446 ~ 25885703 (+) True G87786
TU109615 lncRNA downstream 561591 26091176 ~ 26094196 (+) True G87824
AMCG00021683 mRNA upstream 96717 25418820 ~ 25432607 (+) True AMCG00021683
AMCG00021684 mRNA upstream 114176 25412945 ~ 25415148 (+) True AMCG00021684
AMCG00021685 mRNA upstream 123222 25384796 ~ 25406102 (+) True AMCG00021685
AMCG00021682 mRNA upstream 157798 25279209 ~ 25371526 (+) False AMCG00021682
AMCG00021678 mRNA upstream 521594 24987477 ~ 25007730 (+) True AMCG00021678
AMCG00021688 mRNA downstream 62952 25592537 ~ 25615265 (+) True AMCG00021688
AMCG00021687 mRNA downstream 102601 25632186 ~ 25678181 (+) True AMCG00021687
AMCG00021689 mRNA downstream 184999 25714584 ~ 25716586 (+) True AMCG00021689
AMCG00021692 mRNA downstream 222772 25752357 ~ 25753127 (+) True AMCG00021692
AMCG00021694 mRNA downstream 273840 25803425 ~ 25832384 (+) True AMCG00021694
TU109403 other upstream 163347 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 1351334 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 4293244 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 4297836 21229852 ~ 21231488 (+) True AMCG00021561
TU109668 other downstream 622483 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 3248730 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 3531302 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 3848990 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 3848990 29378575 ~ 29382273 (+) False AMCG00021779

Expression Profile