RNA id: TU6411


Basic Information

Item Value
RNA id TU6411
length 2125
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC122332954
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 19413249 ~ 19440859 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCGCCGTTGGAAATCGATAAGGAGCACCGTGTCTTCACTGTGAACTTCAATGTAAAggGGAAAAGTTCACCCTAACAAACTCAGACCAGCCCATAACTGAAGAGTCCCAAACAAAACCTCACAGGCCCACAGCTCCATCACACTGGTAACGTTTCCAGAGGGAAAGATGCGCCTGATGTAGTTGAAGTCACCGACGAACAGGCTGCCATCAGATCCACAGGCGAGGGCCACGGGAGCCAGCAGTTTGTTGCCATCGGCCTGGCCATTACAGCTAGGACAGGAAATACTGCGCCTGCGCCCATTACCCATAATGGTGCTGATCACTGGAGGCTGCTGGGAGATGAAGACGTTCTCACCGTTGCCTTTGTACAGGATGCCTGCGGGACAGGAAGAGATGGTTGTGTGGGTGAGCAACTGTATAGTATATCATCACTGAGCTGAATTTGGAAAGATGAAGaggcaaattaaaaattcatagcATGATCTAATGAATATCCATAACAGTGATTCTGACGATGatgtaatgttcatttatgtGCTTGATGTACAATAGTCAACAGTTATACCAGTTATGATTAGATAAGTAAGTTCACAGTCTGTGTTTGGAATGTTCCAGACAGGCTGTCAGTGTGTGTtgctctgtatttatatatatatgcattattatgtATACAGACCAACACAGACAAAACATTCACTGACATCCTGTCTGGAGAGCTGCAAACACAGACTTGATGGTTTGTGCATGTGTATCTGACAACCCCCCCCAGAAATGCCACAGTTCAGGGATTGAACCTACAACCTTTCATTTATCAGCCTGAATCTCAAACTATTAGACCACACCAAACCAATCACGCAATGATCAAGGAAGAAGAATGaggcataaaaatgtaatcagcGATACCCGTTTAGTGAATGAGAGGACAATTTATCTATTCAGCATCTCATTACTGCTATAATAACCTATAAATCCCATGCACAACAAGAGATCTGTTTAGTTCATTTAGTATTCTACCTCTTTATCTATACCTTTGGCTAAATAGGAtattaaattactatttttatctttttaattaaataaattaggcAGAAATAAACAGGGAAACATCAAATTGATATTGCGAACAATTAAGAAAAAAGAACTGCTTCATATCTTACATATTAGCATTTCTAAACAGTAAttaatttttgcttttgaatattttattctcAGATGTTTTTCACCTTAATGTAATGCTATCAAAGGGTGTTGCCGTTTTCAAACTGGTTCACAGAACTGTCTGGCATATAGTAATGTAGCATTTTGATAATTCAAGTGCTAATATATTCAGCAGTGAGAAAAGGGGGCAATCTGGCAGAAGTTCAGAATCAATAAACAGCCCAAACACATGCTGCCAGAATGATTATATGGCACTGGCAACTTAAGCAAATCGATTAATCGAATCACATGATGAAATGACTGTTGGGTGCATCGCagtaagttttaaaaaatatgaactacatcaatatatatttttgtttttgttccctCGTATTAGTTCCAAATGAAAATCTAATACTCATCCCTTCACAcactgttaaaatgattttacaaaCTGCTGTGGACTCTTTTCAGACTtttgtaaacatgttttaagcttttattttgagaaCTCTTGCCTGTGAAAACAGGTACagcattattaatgttaaaagcCAGTTAAGACTAACTGTGCGTGAACAAGTTACTACCCATCGTGACTAAAGGTATTtcctgtctttctgtctgtgacTGCACCTCTTCGATTCTGAATCCAGGTAATACACCCCGGTTAATCCTATAACCACAGCAATTGTGAATTTGCATGCCTGTACGGTCGAGTATCTGTGGGAGGGGGAGTGTTTCTGATAGTTTggctgtgtatttgtgtgtgtgtgtgcatgttaaaCACTGTGGAAATGCCACAGGGTGTAGGTTTGGGCTGTGATGAGCTCGCCTGGCCCCAGGTTTGGATTTGATCATCGATGTTGTGCTTTAATATTCTCCCTCAGGACATATTTTAATGGTTGCACTAATAGCAACACCAGATTGACTAAACCCCACCAGACTCTGATGTCCTTACCTGGCTCCTCAGACAGCAGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6307 lncRNA downstream 540405 18869332 ~ 18872844 (-) True G4433
TU6285 lncRNA downstream 562889 18846669 ~ 18850360 (-) True G4413
TU6272 lncRNA downstream 741926 18671018 ~ 18671323 (-) True G4401
TU6121 lncRNA downstream 1264785 18148154 ~ 18148464 (-) True G4280
TU6096 lncRNA downstream 1335847 18076973 ~ 18077402 (-) True G4259
TU6525 lncRNA upstream 87942 19528751 ~ 19529251 (-) True G4590
TU6533 lncRNA upstream 99775 19540584 ~ 19541350 (-) True G4596
TU6534 lncRNA upstream 102167 19542976 ~ 19544360 (-) True G4597
TU6537 lncRNA upstream 111819 19552628 ~ 19553146 (-) True G4600
TU6551 lncRNA upstream 138755 19579564 ~ 19580861 (-) True G4607
XM_043248025.1 mRNA downstream 497313 18885507 ~ 18915936 (-) False vegfc
XM_043248014.1 mRNA downstream 497316 18885507 ~ 18915933 (-) True vegfc
XM_043233920.1 mRNA downstream 545442 18858991 ~ 18867807 (-) True asb5b
XM_043233928.1 mRNA downstream 546699 18858991 ~ 18866550 (-) False asb5b
XM_043233974.1 mRNA downstream 589413 18796291 ~ 18823836 (-) False gpm6ab
XM_043244450.1 mRNA upstream 5109 19445918 ~ 19464201 (-) False dctd
XM_043244440.1 mRNA upstream 5109 19445918 ~ 19462435 (-) True dctd
XM_043244426.1 mRNA upstream 28694 19469503 ~ 19473821 (-) True tmem134
XM_043239491.1 mRNA upstream 35181 19475990 ~ 19518637 (-) False stox2a
XM_043239498.1 mRNA upstream 35181 19475990 ~ 19503916 (-) True stox2a
XR_006250498.1 other downstream 1532832 17815824 ~ 17880417 (-) False znf827
XR_006251556.1 other downstream 3339329 16069177 ~ 16073920 (-) False alg11
TU5142 other downstream 4182363 15230539 ~ 15230886 (-) True G3571
TU5072 other downstream 4383629 15020642 ~ 15029620 (-) True G3515
TU5081 other downstream 4487886 14925085 ~ 14925363 (-) True G3522
TU6528 other upstream 95163 19535972 ~ 19539146 (-) True cdk2ap2
unassigned_transcript_102 other upstream 656146 20096955 ~ 20097026 (-) True trnae-cuc_3
unassigned_transcript_104 other upstream 671941 20112750 ~ 20112821 (-) True trnam-cau
unassigned_transcript_105 other upstream 672333 20113142 ~ 20113213 (-) True trnae-cuc_4
TU6776 other upstream 696263 20137072 ~ 20139930 (-) False si:dkey-9i23.16

Expression Profile