RNA id: TU119718



Basic Information


Item Value
RNA id TU119718
length 838
RNA type TUCP
GC content 0.54
exon number 5
gene id LOC122354338
representative False

Chromosome Information


Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 10993300 ~ 10997453 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GGCGCCAAAGAAAGTTTCCTCTGCCCTTCAGCGGTGTTTATTTGTTCGTTTTCATGAATGTTccttcatgtttttgtttctttagtttGCATCAGTATTTTAATCCGCGCTGCTGAAGGTTATATGAGTTTTACACTGAAAAGTTGAGGCATTAAAGCGCGATTCGTGcaggaagagaagaaagagtTTAAGATGGCAGATGATTCTGATCAGAGATCAGTTTTAATGGAGATCCCAGAACCACAGGCCAAAATCACAGGACGTCTGAGAAGATCCTACATGGATATCTTGAGTTCCCGTCTGTCTCCTGGAGCGAGACGCGTGAGACGCGGACACATGTCGGACACAGGTTCAGGAAGACGGCGGACTGGAGACGCCTCGGACTCCAGCGAGGTGTCCGTCTCCAAGCAGCTGCTCCACAGTCTTCTTCTCGCCGAGCAGTCGGTTCAGATGGCGTCCGTCTCGCTCACGTCTGACCTCAAGCTCTTACTGGACGATCTGCACCAGAAGAAGACCAGCGTCTACAGATCCATCCCGTACTCACGCCTGGCTTCCAACCGGGACGCCCACTGCTTCAGGAAAGCCCGTCCACACCTGATGGCCTTCAAGcgctCGTGTCAGGACGGAGGCCGTCTTCTCCTGCAGAACTCTGAGTGGGAGAAGCTGCTGGAGTTCGTTCAGGCCGCGTGCCGCTTCGCCAGCCAGCTCCCGCAGTGGGAGACCAGcacccataatgcactgcagGAGCACTGCTACGCCACGCTAGCGACGCTGTGTAGCACGGCTCTGCAGAAACACAGACCGGCTGAGCACAGAGCCCGAGAACTCCTGCGCAGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU119693 lncRNA downstream 199530 10734169 ~ 10794873 (-) True G80918
TU119235 lncRNA downstream 418410 10575404 ~ 10575993 (-) True G80631
XR_006252119.1 lncRNA downstream 496424 10494657 ~ 10497979 (-) True LOC122354526
TU119190 lncRNA downstream 542963 10436102 ~ 10451440 (-) True G80596
TU119166 lncRNA downstream 805710 10187557 ~ 10188693 (-) True G80578
TU119723 lncRNA upstream 45802 11043219 ~ 11048148 (-) True G80931
XR_006252116.1 lncRNA upstream 130897 11128314 ~ 11130313 (-) True LOC122354511
TU119746 lncRNA upstream 171859 11169276 ~ 11188207 (-) True G80952
TU119791 lncRNA upstream 201195 11198612 ~ 11201668 (-) True G80980
TU119792 lncRNA upstream 204641 11202058 ~ 11203144 (-) True G80981
XM_043252715.1 mRNA downstream 68085 10781135 ~ 10926318 (-) False il1rapl1b
XM_043252713.1 mRNA downstream 68085 10781135 ~ 10926318 (-) False il1rapl1b
XM_043252714.1 mRNA downstream 68085 10781135 ~ 10926318 (-) False il1rapl1b
XM_043252712.1 mRNA downstream 68085 10781135 ~ 10926318 (-) True il1rapl1b
XM_043251406.1 mRNA downstream 228566 10762491 ~ 10765837 (-) True LOC122353594
XM_043252261.1 mRNA upstream 297 10997714 ~ 11034812 (-) True filip1l
XM_043251387.1 mRNA upstream 84157 11081574 ~ 11094089 (-) True zgc:158270
XM_043252462.1 mRNA upstream 101116 11098533 ~ 11125023 (-) True LOC122354292
XM_043252959.1 mRNA upstream 138753 11136170 ~ 11145070 (-) False srsf7b
XM_043252957.1 mRNA upstream 138753 11136170 ~ 11145070 (-) False srsf7b
TU119703 other downstream 230254 10762500 ~ 10764149 (-) False LOC122353594
TU119698 other downstream 236110 10756775 ~ 10758293 (-) False LOC122354283
TU119689 other downstream 242415 10751240 ~ 10751988 (-) False LOC122354283
unassigned_transcript_1802 other downstream 735137 10259195 ~ 10259266 (-) True trnaq-cug_19
TU119173 other downstream 739555 10245602 ~ 10254848 (-) True G80581
TU119670 other upstream 143497 11140914 ~ 11145019 (-) True srsf7b
XR_006252140.1 other upstream 253838 11251255 ~ 11261120 (-) True si:ch73-100l22.3
TU119776 other upstream 265915 11263332 ~ 11285289 (-) True mafgb
TU119843 other upstream 395943 11393360 ~ 11394876 (-) False LOC122354635
TU119760 other upstream 406227 11403644 ~ 11419330 (-) True G80956

Expression Profile