RNA id: XM_043252930.1


Basic Information

Item Value
RNA id XM_043252930.1
length 2341
RNA type mRNA
GC content 0.54
exon number 10
gene id si:ch73-100l22.3
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11251255 ~ 11261294 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGTTTATCTTTGATACTCCTGTTTTActctgttaaaatgtaataaagttatTTCGTGAGGCGTGTGTTCGTTTCCCGGCTGATTTTAACAAAGGAACGCTTTTAAAACGTGTGTTTAAGTGTCTCTGTAGCAGAAGACAGCAGTGCATTGTATTGTGTTgacatacatttttcttttatgccaaaaatcattaagatataaagtaaagatcacgttccTTAAATAGTCTACCGTAAATGTATCAAAACGTATTTTCTGATTACTAATAAGCAGCTGAggacttcatttgaacaactttaaagatgattttctcaatatttagtttttttttgctccctcaggtTCCAGGTTTtcaaatattgtctgaaatataCAAAGCATACATCAATAGAAAGCTATTTAATGTGTCTTTCAGAGCCATGGAGAGTTATGAAGATTTCATCCGGAGACATTATCACACCGGTGacgatgaagatgatgaagacgaGCCACAGACCCCCGTCTCACCTTCATCGGTGATCGTGTTTCGTGGAGCTCGAGTTCTTCCTCCTCTGTTAAACGAGCAGCAGAGAGACGAGATGAGACGACTGAGAGAGACAGCTGTGAGtctgatgaagaggaggagagaggaagagTCTCGCttcACCGACGTGAGCGTCAGGCGACACACAGACAGGAGTGATGACATCACAGACTGTGACATCACCTCGCCTGCTCCTCTGACATCAACCGCTCACGACGGCCGGTCGACCAATCAGCTGAGAGCTTCTCCAGACGACGGTTCTCTAGAAAACACGCAGGTCACGGTTCTGTTCGAGGGACACGAGCTCCGCTCTCCCGGGCCGTCCGCCACGATGACGTCATCAGGCTACGTGACCAATGACAACACGGCCCTCAGCGGCCGCTTAGATGCGACGCGgtcaggaagtgacatcatcagTCACGCGCCGGTGGACGGAGCGCTTctagaggaggaagaggaggaggaggaggaggtctCAGCGCCGCTTCTGAAGCCCGGATCAGCACCGTCTGAACCGCACCGACCCAGCCTTCAGAACCTGCTCAAGCAATCCCAGGAGTACCGGCGGCGCCAGCGGCTCCTGCGCAGTCAGGCCAGAGCCGCAGAGGAGCACAGCCTGTCCGATAAAGAGAACGAGGAGCTCCAGCCCAAACAGACGCGGAGGAAGGAGCAGGACTCCAAGCAGAGGTTCAGCAGCGTCCCCGCGCCCAGGTTCTGCCTGAGTCCCGTACGCTGCAAAAAGCGCGGCAAGCTCCCGGGTCCGCTTCGGAGAGGCCCGGCTAAACCGGCTCTGACCGGTCGCCGCGACAACGGGCCGCTGATGTCGTCGCAGACGGAGCAGATCGCGCAGCTGGAGCTGAACCTGTCCAGCCTCAAAGCGCTGATCTCGGACCTGGAGACGACGCTCACGCTCTCCCAGGCGGCCGAGGGCGAGCCCAAACCGTCCAGCGGCTCGTCGTACGACGTGGACGTCCCGTCTGACCTGTGGAAGCAGCTGACCCCCGAGGCGGGAGGTCACGAGGTCACGCCCCGGGTCAAACGGAGGCTCCTGATGAACGAGGACGAGGCGGGTCTCTCCAGCGCACCCCGAGGGCTGCAGTCGTCTGCGCAGACGCAGGAGGATCAGGTGACGGCTCTGATGGAGGAAGAGCGCAGGCGTCAGGAGGAAGCACTGCAGTCTCTCTGTCTGCTGACCGCTGTGGTCAGGGGGTTTCTGACCCGTCGTCTCTTACACACTGAACGTGTGTCAGGTCTCGTCAGGATCATCACGgactCGAGGGTGTTTCTCGGGTCGTTTCAGTCTCAGGCGGTCAGCAGCAGACAGGAGGTCAGTCTTCAGGAGCGGGTCACTCTGCAGCTGCGAGCGGCGCGGTGTGAACTCCACCAGATCTTCTTCAGCTGCAGCTGCTCCGAGCGGATGAAGATGATCCGCTGCGACCGGGAGCTGAGCAGAGAGCGCCGCCGCTCACACGATAATAAAGTGAAGGGCTCTCTCTCCGCCGCCACCAGAAAGTCTTTAGAGAGGAAGAAAGTGATGTTCCAGAGGAAGAGGTTCTCTCCGTCCAGTGAGGAGAAGTGGAACCCGGTGCCAAAGATCTATCGAGTCTCGAAGACGACGGCGTTCCGCGGAGCTCGATGAAGCGAGGACAGACTCGTCTCGTTTCTCTGCTGTTTTTAGATCAACGTTGCCAATTATTTTAtctggttttatttatatatatatttttctgtacgCCTCGCAGTTTCGCCGCTGCTTTTCCTGCTGGTTTTGTCTTTGCACACgtcaataaattgcattttgtcatttacacGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119775 lncRNA downstream 703 11249954 ~ 11250552 (-) True G80965
TU119800 lncRNA downstream 2082 11230185 ~ 11249173 (-) True G80987
TU119801 lncRNA downstream 2082 11230185 ~ 11249173 (-) False G80987
TU119805 lncRNA downstream 12058 11238591 ~ 11239197 (-) True G80989
TU119774 lncRNA downstream 36787 11210953 ~ 11214468 (-) True G80964
TU119766 lncRNA upstream 72859 11333979 ~ 11399132 (-) True G80958
TU119847 lncRNA upstream 123256 11384376 ~ 11387053 (-) True G81018
TU119848 lncRNA upstream 123256 11384376 ~ 11387053 (-) False G81018
TU119841 lncRNA upstream 129472 11390592 ~ 11393645 (-) False LOC122354635
TU119842 lncRNA upstream 129472 11390592 ~ 11393645 (-) True LOC122354635
XM_043251573.1 mRNA downstream 24628 11217681 ~ 11226627 (-) False srsf11
XM_043251572.1 mRNA downstream 24628 11217681 ~ 11226627 (-) True srsf11
XM_043251575.1 mRNA downstream 24762 11217681 ~ 11226493 (-) False srsf11
XM_043251574.1 mRNA downstream 28010 11217681 ~ 11223245 (-) False srsf11
XM_043251985.1 mRNA downstream 57039 11190233 ~ 11194216 (-) False plaat1
XM_043252848.1 mRNA upstream 7225 11268345 ~ 11286218 (-) False mafgb
XM_043252849.1 mRNA upstream 7225 11268345 ~ 11286218 (-) False mafgb
XM_043252851.1 mRNA upstream 7225 11268345 ~ 11286213 (-) False mafgb
XM_043252850.1 mRNA upstream 7225 11268345 ~ 11286213 (-) False mafgb
XM_043252846.1 mRNA upstream 7225 11268345 ~ 11273075 (-) False mafgb
TU119670 other downstream 106236 11140914 ~ 11145019 (-) True srsf7b
TU119718 other downstream 253838 10994403 ~ 10997417 (-) False LOC122354338
TU119703 other downstream 487106 10762500 ~ 10764149 (-) False LOC122353594
TU119698 other downstream 492962 10756775 ~ 10758293 (-) False LOC122354283
TU119689 other downstream 499267 10751240 ~ 10751988 (-) False LOC122354283
TU119776 other upstream 2212 11263332 ~ 11285289 (-) True mafgb
TU119843 other upstream 132240 11393360 ~ 11394876 (-) False LOC122354635
TU119760 other upstream 142524 11403644 ~ 11419330 (-) True G80956
XR_006252062.1 other upstream 505711 11766831 ~ 11780809 (-) False ero1b
XR_006252156.1 other upstream 639848 11900968 ~ 11901098 (-) True LOC122354705

Expression Profile