RNA id: XM_043251985.1


Basic Information

Item Value
RNA id XM_043251985.1
length 1507
RNA type mRNA
GC content 0.45
exon number 5
gene id plaat1
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11190233 ~ 11194216 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCCGCAATGAACACGGCGCCGAGTCTCGCGAGAACGAGGGGACTCGCCCTCATCCGTCGAAACGATCCTCCAGTCCGGCTAGTCTCGCGAGACTGAGCACCAGCGAGAGCATCACCTTTTTCAGTCATCGAAGACCTGCTGGACATAGAGGAGGTCATGGAGGTGTCCTGCGGCTCCTGCTGGACGAGATCACAAACACATCTCTTTACAATCAAACCATGTTTACAGAGGTGCTTTGGAATGTGggaaatctatttatttttttattttatttatttttaatgcatgtatttttgccTTTAACTAGACAgggcattattattatattgagaaataaaatcaacataatgagtatttatttttggcctttgttgcattattattctaatattattattctattaaattgcaaagatttattttagccattttttggCTTTATGTAGACAGGctttttaacatattattagatcatgttttacatatatatataaaatcagtgtgttgaagatgtatttttatactGGAGTGTTAGAAAATCCTTAATAAAGCATGATGGAGAAATTCATGTGAAAGTATCTTCATAAAAAGCACTAGATGTTAgatgttcctctctctctcgttcttgCTCTGGTCGGCTCTGGTTGTTCTGTGTTGTGTGACACACAAAGGCAGTGAGTGACCGGTGAGTGACCGCAGCAGAGAGGTCAGATCAGTCAGAAGATCAGCAGCTGAGGATGACCTCTGATAATAAaTGGCCTCGAGTGAAGCTGATAACTCTCTGAGTAACGAGGAGCCTCGGCCGGGAGACCTGATCGAGATCTTCAGACCTGCCTATCAGCACTGGGCCCTTTACCTGGGAGACGGTTACATCATCAACCTCACACCCCTCgACGAGAGTCCGGCGGCCGCCGTGTCCAGCGTGAAGTCCGTCTTCAGCCGCAAGGCCGTGGTCCGCATGCAGCTCCTGAAGGAGGTGGTGGGAGGAGACTCGTACCGCATCAATAACAAGTATGACGACGATCACACTCCGCTGGCCGTGTCTGAGATCATCCAGAGAGCGCAGCTGCTCATCGGTCAGGAGGTGTCCTACGACCTGCTGGGCAGTAACTGTGAGCACTTCGTCACGCTCCTGCGCTACGGGGAGGGCGTCTCTGAGCAGgcGTCTCGGGCCATCGGGGCCATCAGTTTAGTGACGGCTGCAGCGAGTGCGTTCTCAGTGCTGGGTCTGATCAACACACGCTCCAGAAACAGACCCTTCTAGAGCCCGTCCGGAGAAGATCCGAGCTCAGGGGAACTTAACTCTTGCTGTGACGCTATGATGTGGTATTCAAAGGACTGAAATAGAACGGTGGTGAAGTAGGACTTTGTCTGTACGAaggaaatatttgtatttattttgattcataaTTGCTATGGaaatctattatatttatttttaagaattatacAGGTTAATAAACTCAGTGCTGTCAGATGATtaatcatccaaaataaaagtttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119746 lncRNA downstream 2026 11169276 ~ 11188207 (-) True G80952
XR_006252116.1 lncRNA downstream 59920 11128314 ~ 11130313 (-) True LOC122354511
TU119723 lncRNA downstream 142085 11043219 ~ 11048148 (-) True G80931
TU119693 lncRNA downstream 395360 10734169 ~ 10794873 (-) True G80918
TU119235 lncRNA downstream 614240 10575404 ~ 10575993 (-) True G80631
TU119791 lncRNA upstream 4396 11198612 ~ 11201668 (-) True G80980
TU119792 lncRNA upstream 7842 11202058 ~ 11203144 (-) True G80981
TU119793 lncRNA upstream 7842 11202058 ~ 11203144 (-) False G80981
TU119774 lncRNA upstream 16737 11210953 ~ 11214468 (-) True G80964
TU119800 lncRNA upstream 35969 11230185 ~ 11249173 (-) True G80987
XM_043252956.1 mRNA downstream 7461 11148740 ~ 11182772 (-) False sos1
XM_043252955.1 mRNA downstream 7461 11148740 ~ 11182772 (-) True sos1
XM_043252959.1 mRNA downstream 45163 11136170 ~ 11145070 (-) False srsf7b
XM_043252957.1 mRNA downstream 45163 11136170 ~ 11145070 (-) False srsf7b
XM_043252462.1 mRNA downstream 65210 11098533 ~ 11125023 (-) True LOC122354292
XM_043251573.1 mRNA upstream 23465 11217681 ~ 11226627 (-) False srsf11
XM_043251572.1 mRNA upstream 23465 11217681 ~ 11226627 (-) True srsf11
XM_043251575.1 mRNA upstream 23465 11217681 ~ 11226493 (-) False srsf11
XM_043251574.1 mRNA upstream 23465 11217681 ~ 11223245 (-) False srsf11
XM_043252931.1 mRNA upstream 57039 11251255 ~ 11261294 (-) False si:ch73-100l22.3
TU119670 other downstream 45214 11140914 ~ 11145019 (-) True srsf7b
TU119718 other downstream 192816 10994403 ~ 10997417 (-) False LOC122354338
TU119703 other downstream 426084 10762500 ~ 10764149 (-) False LOC122353594
TU119698 other downstream 431940 10756775 ~ 10758293 (-) False LOC122354283
TU119689 other downstream 438245 10751240 ~ 10751988 (-) False LOC122354283
XR_006252140.1 other upstream 57039 11251255 ~ 11261120 (-) True si:ch73-100l22.3
TU119776 other upstream 69116 11263332 ~ 11285289 (-) True mafgb
TU119843 other upstream 199144 11393360 ~ 11394876 (-) False LOC122354635
TU119760 other upstream 209428 11403644 ~ 11419330 (-) True G80956
XR_006252062.1 other upstream 572615 11766831 ~ 11780809 (-) False ero1b

Expression Profile