RNA id: TU119793


Basic Information

Item Value
RNA id TU119793
length 943
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G80981
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11202058 ~ 11203144 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCATCAAAATACTGAAATAGTACCAAAAGTAAAGAAATAGTATCAAATGTATCCAAGTAGTATGAAAAGCACTGAACTTTGATCAAACCTATTAAAATGTGACGCACTGATTACTCCCAAGCAGACTCTTCTGAATTTAGTGCAGCTCATATAAACATCTTCTGATCCTGAGGTTTTCTGAAGCCTTCAGAACGAGAATCAGTCGATTCTGATTCACAGCCCTTAAACTCCCATGATGCACAGCGTGTCACACGAGCTCACAAACACCTCCTTCCTACTCTTAGTCAAGTAGGACGTTTAGGAGAAGGTTTAGGAGAGTAAATGAGACAGAATgacagttttgggtgaactagtcCTTTAACTAGTCGACCGGCATCTAAGAGGACCTCTGATGTCATCAGTCAAAGGTCACGACCCACTTCTCTCTGCTGATGGAGAGAGTAAATGAGAACAGAGTGATGCGTGAGCTTCGTCATCGTCATCATCGCCTCCACCCACCATCACTGATTCATCTTCACTGAGAAATTAATAACTCAAGCCACCTAAACGTCCCTCTGAGACAGAGAGTCAAAAGATCATCAGGAAATATGAACAGAAGAACTCAGATCTCACTACGAGCCGCTAACTGACACGTCTGGATTAACTTGAAAACACTGTTATagagcagaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacacacacacacacacacacacacacgcacgctcacacacacacacacacacacacacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcacacacacacacactcacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119791 lncRNA downstream 390 11198612 ~ 11201668 (-) True G80980
TU119746 lncRNA downstream 13851 11169276 ~ 11188207 (-) True G80952
XR_006252116.1 lncRNA downstream 71745 11128314 ~ 11130313 (-) True LOC122354511
TU119723 lncRNA downstream 153910 11043219 ~ 11048148 (-) True G80931
TU119693 lncRNA downstream 407185 10734169 ~ 10794873 (-) True G80918
TU119774 lncRNA upstream 7809 11210953 ~ 11214468 (-) True G80964
TU119800 lncRNA upstream 27041 11230185 ~ 11249173 (-) True G80987
TU119801 lncRNA upstream 27041 11230185 ~ 11249173 (-) False G80987
TU119805 lncRNA upstream 35447 11238591 ~ 11239197 (-) True G80989
TU119775 lncRNA upstream 46810 11249954 ~ 11250552 (-) True G80965
XM_043251986.1 mRNA downstream 7842 11190233 ~ 11194216 (-) False plaat1
XM_043251985.1 mRNA downstream 7842 11190233 ~ 11194216 (-) False plaat1
XM_043251984.1 mRNA downstream 7844 11190233 ~ 11194214 (-) False plaat1
XM_043251983.1 mRNA downstream 7844 11190233 ~ 11194214 (-) True plaat1
XM_043252956.1 mRNA downstream 19286 11148740 ~ 11182772 (-) False sos1
XM_043251573.1 mRNA upstream 14537 11217681 ~ 11226627 (-) False srsf11
XM_043251572.1 mRNA upstream 14537 11217681 ~ 11226627 (-) True srsf11
XM_043251575.1 mRNA upstream 14537 11217681 ~ 11226493 (-) False srsf11
XM_043251574.1 mRNA upstream 14537 11217681 ~ 11223245 (-) False srsf11
XM_043252931.1 mRNA upstream 48111 11251255 ~ 11261294 (-) False si:ch73-100l22.3
TU119670 other downstream 57039 11140914 ~ 11145019 (-) True srsf7b
TU119718 other downstream 204641 10994403 ~ 10997417 (-) False LOC122354338
TU119703 other downstream 437909 10762500 ~ 10764149 (-) False LOC122353594
TU119698 other downstream 443765 10756775 ~ 10758293 (-) False LOC122354283
TU119689 other downstream 450070 10751240 ~ 10751988 (-) False LOC122354283
XR_006252140.1 other upstream 48111 11251255 ~ 11261120 (-) True si:ch73-100l22.3
TU119776 other upstream 60188 11263332 ~ 11285289 (-) True mafgb
TU119843 other upstream 190216 11393360 ~ 11394876 (-) False LOC122354635
TU119760 other upstream 200500 11403644 ~ 11419330 (-) True G80956
XR_006252062.1 other upstream 563687 11766831 ~ 11780809 (-) False ero1b

Expression Profile