RNA id: XM_043257700.1


Basic Information

Item Value
RNA id XM_043257700.1
length 1660
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC122357988
representative True

Chromosome Information

Item Value
chromosome id NC_056712.1
NCBI id CM032081.1
chromosome length 26701998
location 26068927 ~ 26074927 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaactaaaatgaaaagaaaactgaaaatataaaaactaatgtaGCAATCAGGGATATTGTAGTATCGCTGAGATTTCTATCAATTGAAAATGTTAATACTGATTATATCTCTTATAATATCTCTGGGGTGTGTTCTTCTGTTAATGGTTTCCCATCAAGAACTGGAAGCGCTTGGTCTTTGGGGAGCGTTCTCATGAATCAAGTGTTTTTCTGCGAGCAGCGACACGATCTCCTCGGCCCTTATTTGGCAGGTCTTcctcttctgtctctctttccgTTAAACGAAAGTACAGTTGAAATGCGAGCCGAGGCCAAACCCACGTCTGGAGAGGAGGAGACAcactgtataaacacacacacacacacacacacacacacacacgagccgTCGACATGAGGCAGCAGAGCGTCAAGATCTTGTACTACGCTAATAAATCCGAGGAGCCCTTCGTGGAGATCGTCACCGTGAAGCAGCAGAAGAAGCGCCGTCCGAGCATCTGCAGCTCCGCCGACTCGGAGTCTGAAGACCTTCTGCCCGTTCTTACCGACCGCAGCCAGATCCTGAACGAGCATCACCTGGAGCAGCTGGTGAGTGAGATCCCGGCGAGGACGCAGGGTTACTCCTGGAAGCTGGTGTACAGTACGACTCAACACGGCACCAGCCTCACGACTCTGTACCGACAGATGAGAGAGTCGGACCGACCCGTCCTGATGGTCATCAAAGACACCGACGAGCAGGTTTTCGGGGCGTTTTCCTCCGAGCCGTTCAGAGTCAGCAAGTACTGCTACGGGACGGGAGAGACGTTCCTCTACAGCTTCAGTCCAGAGTTTCAGATCTTCCGCTGGAGCGGAGAAAACTCCTACTTCGTGCGAGGATTCATGGACTCGCTGCAGATGGGAGGAGGCGGAGGTCCGTTCGGTCTGTGGCTGGACTCCGATCTCTATCATGGCTCCAGTTACTCGTGCGACACCTTCTGCAACCGTCCCCTCAGCCTCCATCACGACTTCACCGTCCGGGACCTGGAGGTGTGGACCTTCGTGTGAACTCAAACCGGTTTACCGGCGCTGATCAGGAGAGAAACAGTCAAAGCGGAGACAAGTCGAGGCAGGAGCTGAGGTTTCCTGTAACTGTGATCTTTCAGGGGCCTGACGGGACCTGAACGCATTCCTCGAGCGTGCTGCCTACTTAGGCGACGTAGCGCACTAGATTTGAGACGGAGCTGCTGTTGTTTAGCGGCGGAAGCGCGGTTAGTGGGTTTCGTCTCGAGCGCACGCCATTCAGAAACGCTTCTTCCTTCTTCTTTGACAGATAACCGAgcaacagaaacacacaccgaGATGAAGATACGAACTTTTCTTCAACCCCTGAATGATGTTTACGGTTTTCTTTCTTGACGAACAGGTTGCACTCAAACTAAACACAAATAAGATCTTTTCTCGAATGCTACGAAAACTACTGACGCTCAcggtttactgtgttttaaaatgcacttagAGGACGAACGGCTTACCGGGTTTTTTTGGATTGGGATTGTGCTTCTACtcgttgtttttttactttatttaacgCCTGTGAGTTTTGGGGTTTGGTGTCTGTCGCGCGGCGCCGGCGCTGCCGTCCTGGGGTCCGGGTTTCTAATAAAACACCTTTTATACGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151272 lncRNA upstream 12951 26058163 ~ 26058439 (+) True G102341
TU151263 lncRNA upstream 15286 26047050 ~ 26056104 (+) True G102335
TU151258 lncRNA upstream 31315 26038576 ~ 26040075 (+) True G102334
TU151255 lncRNA upstream 36416 26032979 ~ 26034974 (+) False G102332
TU151202 lncRNA upstream 239145 25830239 ~ 25832245 (+) True LOC122357999
TU151277 lncRNA downstream 10453 26085380 ~ 26090260 (+) True G102344
TU151282 lncRNA downstream 18918 26093845 ~ 26126060 (+) True G102348
TU151286 lncRNA downstream 24735 26099662 ~ 26101843 (+) True G102352
TU151335 lncRNA downstream 145307 26220234 ~ 26277550 (+) True G102385
TU151351 lncRNA downstream 159955 26234882 ~ 26236719 (+) True G102393
XM_043257698.1 mRNA upstream 65344 26003920 ~ 26006046 (+) True nr0b2a
XM_043257675.1 mRNA upstream 73099 25990764 ~ 25998291 (+) True LOC122357970
XM_043257692.1 mRNA upstream 80372 25981040 ~ 25991018 (+) True LOC122357982
XM_043257676.1 mRNA upstream 90908 25957666 ~ 25980482 (+) True LOC122357971
XM_043257691.1 mRNA downstream 1978 26076905 ~ 26088981 (+) True azi2
XM_043257690.1 mRNA downstream 2006 26076933 ~ 26088981 (+) False azi2
XM_043257679.1 mRNA downstream 41288 26116215 ~ 26121752 (+) False eomesb
XM_043257681.1 mRNA downstream 41290 26116217 ~ 26121752 (+) False eomesb
XM_043257680.1 mRNA downstream 41292 26116219 ~ 26121752 (+) True eomesb
TU151254 other upstream 35752 26032979 ~ 26035638 (+) True G102332
unassigned_transcript_1961 other upstream 1843142 24228177 ~ 24228248 (+) True trnae-uuc_32
TU150835 other upstream 1854627 24216243 ~ 24216763 (+) True G102017
TU150815 other upstream 1981868 24086724 ~ 24089522 (+) True tmem35
unassigned_transcript_1960 other upstream 2019615 24051703 ~ 24051775 (+) True trnav-uac_6
TU151318 other downstream 93631 26168558 ~ 26171402 (+) False gnrhr3
XR_006252567.1 other downstream 299406 26374333 ~ 26383634 (+) False khdc4

Expression Profile