RNA id: XM_039792763.1


Basic Information

Item Value
RNA id XM_039792763.1
length 4124
RNA type mRNA
GC content 0.61
exon number 27
gene id LOC120554133
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 11154926 ~ 11220986 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cccctcaacCCCTCCTGCGCTGAGAAAGCCCCCAGAGTCTAGCATGGGAGAGAAATAAAAGCACTGCGGGACACATGTTGGGACGACTGGCTTCCTCCTGGCCCGTGTTGGTACCAGTGCCAGACAGCGAGCTGCCTCTCTGGTTGGAGTAGCCAAATCAAAAGCTTCATGGGgattggctgctgctgctggaagtTTACTTCCTGTTTCCAGCCTTGAGGAATTATTGACAGACCGTCCTGAGTGTTAAATCAGCCTgagcgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcgcacacacacacacagtcggcACATCCACAGTTTTGGCAGGATAATAGCCTCCTGATTGCCACCCTGTAATCACATCTGCACTCGggcaaacacacaactgttcTGCAGTACAACACACCAAGCCGggcaaacacacaactgttcTGCAATACACACACCAAGCCGGGGGCTCATCTGCCGTACTGCGCGGGCACGCACCCGCCCCACCTGTCAGCGATGACATCACACAGCCACCAAGAGGGGATCCTGGGAAAGGAGCAGCCGCTGGAGCTTCTGAAGACATCGGCGCTCAACCACATCCCAACAGTGGACATCAACTCGGCGCTGCCCCTGCGTCTCCCTCCAGCCGCCATTCCCATGGACCTGCGCGTGGAccatcaccagcagcagcagcaagtgtCCTCGCTCTCCCCGTCCAGTCCAGGCCCGgccggcggcggcggcggcggtggCGGCGTGGTGGGGGCCTCGGTGCgcgagcagcagctgcagcaggagcTGCTGACCCTGAAGCAGAAGCAGCAGATCCAGCGGCAGATCCTCATCGCCGAGTTCCAGCGGCAGCACGAGCAGCTGTCCCGCCAGCACGAGGCCCAGCTCCAGGAACACATCAAGcagcagcaagagCTTCTGGCATTGAAGCACCAGCAGGAGCTGCTGGAGCACCAGAGGAAGATGGAGAACCACCGTCTGGAGCAGGAGCTGGAGaagcagcagagggagcagaagctgctgctgctgaagaacAAGGAGAGGGGACAGGAGAGTGCAGTGGCGAGTACTGAGGTGAAGATGCGGCTCCAGGAGTTTGTCCTGAACAAGAAGAAGGCGCTGGCCCAGCGGAGCCTCAACCAAGGAGGCCTCCACAATGACGCTCCCTACTGGTACCGAAAAACCCAGCACAGCTCCCTGGACCAGAGCTCGCCTCCACAGACTGGTGTGTCCACCTACAACCACCCTGTGCTGGGTGTCTACAACCCCCGGGATGACTTCCCACTGCGAAAGACTGCCTCGGAGCCCAACCTGAAGCTGCGCTCCAGGCTGAAGCAGAAAGTAAGCGAGCGGAGGAGCAGTCCACTGCTGCGTCGTCGAGACAGCCCCATCACCACCGCCAAGAAACGCTCACTCGACATGGCAGactcTGCGTGTAGCAGCGCCCCCGGCTCAGGCCCAAGCTCCCCAAATAACAGCTCCAACAACATCCCCAATGAGAACGGCATCACTGTGTCAGTCTCCAACAGTATGGAGACGTCTCTGGCCCAGAGGCTGTGCGGCGGTGCTGAGCGCGGCTCCATTAACCAGCTGTCCCTCTACACTTCACCATCTTTACCCAACATCACCCTGGGGCTGCCCGCCACTGCCACGTCCACCGCTGCTTCCAATGTGACTTCGGCCCAGCAGGATGGAGGTCTGCAGCCGGCCCTCTCCCTCagccctcccttcctctccggCGGCCACTTGACCCCCTACCTGGCTGAGGCCGGAGCGGGAACAGGCGGGCACGGCGCGCACAGTCCACTGCTTCAACACATGGTGCTCATGGACCAGAGCCCGGCACAGAGCCCCCTGGTGACAGGTGTGAGCGGCCTGTCCATGTCGCCAGCAGCATCCATGGCCAAGCTGCAGCGGCAGCACCGGCCACTGGGGCGGACCCAGTCGGCCCCTCTGCCCCAAGGGAGCGCCGCGCAGGCTCACGCCCAAGCCCTGGCCCTGCAGCAGCTGGTGGTGCAACAGCAGCACCAGCAGTTCCTGGAGAAGCACAAGCAGCagtttcagcagcagcagctccacctCAACAAGATGATGACCAAGCCCAGCGAGTCACCCGTGGGCCGCCAGCACCAGAGCCACCCGGAGGAGACGGAGGAGGAGCTGAGGGAACACCAGGACGGTGGGGCTCTGCCGCCGGGGGTCACCATCAAGCAGGAGCCCCCCGACCCGCAGGAGCTGCAGGAGGAGGCGCTGCAGCAGCACATGGAGCGGGATAGGCAGGTGGAGCAGGAGCTGCTCTTCAGACAGcaggccctgttgttggagcagcagcGCATTCATCAGCTGAGAAACTACCAGGCCTCGATGGAGGCCGCCGGCCTGTCCATCTCCTTCCCGGGACACCGCCCCCTGTCCAGGGCCCAGTCGTCTCCGGCCTCAGCCTCCTCCTTCCCGATCAGCGTCCCGGCCCCCGATCCTCCCGCCAAGCCCCGCTTCACCACAGGCCTGGTGTACGACTCTCTCATGCAGAAGCACCAGTGTATGTGTGGAAACACCAACAGTCACCCGGAGCACGCAGGCCGGATTCAGAGCATTTGGTCTCGGCTGCAGGAGACCGGACTCAGAGCGCAGTGTGAGtgtatccGTGGGAGGAAGGCCACTCTGGAAGAGCTGCAGACAGTTCACTCTGAAGCCCACGTCCTGCTGTACGGAACCAACCCTCTCCGACAGAAACTTGATTGTTCGGTCACTCCCATGTTCGTGCGGCTACCGTGCGGAGGGTTGGGGGTGGACAGCGACACCATTTGGAACGAGGTCCACTCCTCCAGTGCGGCGCGACTCGCTGTCGGCTCCGTGGTGGAGGTGGTTTTCAAAGTGGCTACCGGAGAGCTCAAGAATGGTTTCGCTGTGGTCCGCCCTCCTGGACACCACGCAGAGGAAAGCACTCCCATGGGTTTCTGCTACTTCAACTCGGTGGCCATCGCAGCCAAACTGCTGCAGCAGAGGCTCAACGTCAGCAAGATCCTCATCGTGGACTGGGACGTTCACCATGGCAACGGCACCCAGCAAGCGTTCTATGATGACCCCAATGTCCTTTACCTGTCTATTCATCGCTATGACGACGGCAACTTCTTCCCTGGAAGTGGAGCACCTgacgagGTGGGCAGTGGGCCTGGCGTCGGGTTCAACGTTAACGTCGCTTTCACTGGGGGCCTGGATCCACCCATGGGAGACGTAGAGTACCTGGCTGCCTTCAGgTCAGTGGTCATGCCCATAGCCAATGAGTTTGCCCCGGACATCGTGCTGGTCTCCTCTGGCTTCGACGCCGTGGAGGGACACCCTCCGCCACTTGGCGGCTACACTTTGACGTCCAAATGTTTTGGTTATCTGACCAGGCAGCTGATGACCCTCGCTGGAGGCCGGGTAGTCCTGGCTCTGGAGGGGGGTCACGACCTCACCGCCATCTGCGACGCCTCGGAGGCCTGCGTGGCCGCCCTGCTAGGCCAAGAGCTGGACCCGCTGCCAAAGGCCACCCTCGAGCAGAGGCCCAACCCCAACGCTGTTCGCTCCCTGGAGAAAGTTTTAGAGACTCACAGCAAGTACTGGTGCTCGGTGCATCGCTACTCACCGCTGCTGGGACTTTCCCTGCTGGAGGCCAAACGAGGAGACTCCGAGGAGGCTGAAGCTGTCAGTGCCATGGCCTCTCTGTCCGTGGCCAACACCAACGCCATGGATCAGAGCAGGCCCGAGGAGGAGCCCATGGAAGAGGAGGAACCGCTGTAACGGAGGGAAACGTGAGGGCGTCACACTGTTAATCATTTTGACCTCTCCGGAGAAGAGTCTCGACTGATCCCTTCTTTTAGTCCCACCTAACCCCACTCACCGCGTCAGTCACCTTGATTGGCAGCCCCCTCGGTCAAAAAACGAGGGAGAGAGTGGGTGGGCTCAGCCTCAAGAGTAGGGAGCCAATCAGGAGACAGAGGACTGAATTGGGtggggggaggaaaaaaaattaaacataaCAGCGCTGCTTGGCGGCACTCGCTCAGAGACACTCATTATTGTTTTCTTTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU317815 lncRNA downstream 2375 11151842 ~ 11152551 (-) True G234032
TU317810 lncRNA downstream 15738 11136627 ~ 11139188 (-) True LOC120554131
TU317807 lncRNA downstream 60744 11041186 ~ 11094182 (-) True G234024
TU317809 lncRNA downstream 71758 11060811 ~ 11083168 (-) True G234026
XR_005638320.1 lncRNA downstream 107990 11039109 ~ 11046936 (-) False LOC120554127
TU317841 lncRNA upstream 63818 11284792 ~ 11285090 (-) True G234051
TU317856 lncRNA upstream 84637 11305611 ~ 11306703 (-) True G234063
TU317874 lncRNA upstream 111307 11332281 ~ 11332560 (-) True G234078
TU317876 lncRNA upstream 112393 11333367 ~ 11334089 (-) True G234080
TU317961 lncRNA upstream 115636 11336610 ~ 11341839 (-) True G234152
XM_039792761.1 mRNA downstream 4275 11140537 ~ 11150651 (-) True LOC120554132
XM_039792759.1 mRNA downstream 15681 11136712 ~ 11139245 (-) False LOC120554131
XM_039792758.1 mRNA downstream 49094 11104367 ~ 11105832 (-) True LOC120554130
XM_039792756.1 mRNA downstream 53773 11095516 ~ 11101153 (-) False LOC120554129
XM_039792770.1 mRNA upstream 9247 11230221 ~ 11232384 (-) True LOC120554135
XM_039792772.1 mRNA upstream 32672 11253646 ~ 11260652 (-) True LOC120554137
XM_039792773.1 mRNA upstream 32672 11253646 ~ 11260618 (-) False LOC120554137
XM_039792774.1 mRNA upstream 33489 11254463 ~ 11260329 (-) False LOC120554137
XM_039792780.1 mRNA upstream 44582 11265556 ~ 11274982 (-) True arpc2
TU317805 other downstream 107967 11040007 ~ 11046959 (-) False LOC120554127
TU317684 other downstream 185816 10967423 ~ 10969110 (-) True G233954
TU317688 other downstream 196294 10948468 ~ 10958632 (-) False G233954
XR_005638322.1 other upstream 169030 11390004 ~ 11441926 (-) False spega
TU318109 other upstream 1066946 12287920 ~ 12293143 (-) False G234253
TU318311 other upstream 1732116 12953090 ~ 12954125 (-) True G234405
unassigned_transcript_1566 other upstream 1764843 12985817 ~ 12985888 (-) True trnae-uuc_66
unassigned_transcript_1567 other upstream 1835642 13056616 ~ 13056687 (-) True trnad-guc_30

Expression Profile