RNA id: AMCG00014136


Basic Information

Item Value
RNA id AMCG00014136
length 1445
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00014136
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2268517 ~ 2278983 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcATGGCTGATACAAACTACACAGGCTCAATTGTCAGTGAATTCATTATTGTTGGTTTCCCCGGAatgcaggacagagagagcaagGCCATCCTGTTTGCTGTGTTCCTGACAGTCTACCTCCTCATTTTACTGGGGAATTTTCTCCTTATTTGCATACTGGCGGCAGACAGACACTTGCACACCCCCATGTACCTGACAATATGTAGTCTGGCTATTATTGACATCACCTTTTGTACAACCACTGTACCCACTATGCTAGCGCAGTTCTGTGGACCCAATAGAGTCCTACAATGCTTCTGTGACTATTCAGGAGTGCTACGCCTGGCCTGTGGAAATGTTCTCTCAATTAGCTATGTTGGCTTATTTTGTGGGCTGAGTATTCTCCTCATCACTCTGTTTCTCATCCTGTTGTCCTATGTGAAGATCCTTCTGTCAGTGTTGCTTATCTCCAGATCAGGGGGAAGAGCCAAGGCCGTGTCCACCTGCAGCTCACACCTGCTGGTCATCTCTGTGTTCTTCCTCACATCTGCAGGAGTCTATATCTCCAACAGGATTCCTGGGACCTCAGTGGACATGCGTATCATGGGGACTGTGATTATGAATGTCTTCCCTGCCCTCATGAATCCGATCATCTACTGCCTGAGGACTAAAGAGATCAGGGGCAGCTTGgtgaaaaacctgaaaaagatcaaaatcttCCCAGGTAGCAAAACAGCCATGGCTGATGCAAACTACACAGGATCAATGGTCAGTGAATTCATTATTGTTGGTTTCCCTGGactgcaggacagagagagcaagGCCATCCTGTTTGCTGTGTTCCTGACAGTCTACCTCCTCATTTTACTGGGGAATTGTCTCCTTATTAGCATACTGGCGGCAGACAGACGCTTGCACACCCCCATGTACCTGACAATATGTAGTCTGGCCATTATTGACATTGCCTTTTCTACAACCACTGTACCCACTATGCTAGCTGTCTTCAGTCTGGCATTCACAAAGCGATTCTGTGGACCCAATAGAGTTCTGCAATGCTTCTGTGACTATTCAGGAGTGCTACGCCTGGCCTGTGGAGATGTTCTCTCAATCAGCTATGTTGTCTTATTTGTTGGGCTGAGTATTCTTCTCATTcctctgtttttcattgtgttgtCCTATGTGAAGATCCTTCTGTCAGTATTGCGTATCTCCAGCTCAGCTGGAAGAGCCAAGGCTGTGTCCACCTGCAGCTCACATCTGCTGGTCCTCTCTGTGTTCTTCCTCACGACAGCAGGGGTCTTCATCTCCTACAGGATTCCTGGGACCTCCGTGGACATGCGTATCATGGGGTCTGTGATTCATAATGTCTTCCCTGCCCTCATGAATCCGATTATCTACTGCCTGAGGACTAAACAGATCAGAGACAGTTTGGTGAACACCCTGAAAAAGAGCCCTATCTTCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84811 lncRNA downstream 143610 2095067 ~ 2124907 (-) False AMCG00014119
TU84810 lncRNA downstream 172886 2095306 ~ 2095631 (-) False AMCG00014119
TU84803 lncRNA downstream 181396 2086111 ~ 2087121 (-) False AMCG00014119
TU84795 lncRNA downstream 209026 2056849 ~ 2059491 (-) True G67881
TU84744 lncRNA downstream 326097 1942027 ~ 1942420 (-) True G67849
TU84833 lncRNA upstream 71142 2350125 ~ 2373329 (-) True G67911
TU84881 lncRNA upstream 329286 2608269 ~ 2608479 (-) True G67953
TU85010 lncRNA upstream 417825 2696808 ~ 2701159 (-) True G68057
TU85014 lncRNA upstream 428834 2707817 ~ 2710329 (-) True G68061
TU85029 lncRNA upstream 479502 2758485 ~ 2758840 (-) True G68070
AMCG00014133 mRNA downstream 91213 2176819 ~ 2177304 (-) True AMCG00014133
AMCG00014118 mRNA downstream 113771 2151885 ~ 2154746 (-) True AMCG00014118
AMCG00014119 mRNA downstream 143564 2085941 ~ 2124953 (-) True AMCG00014119
AMCG00014116 mRNA downstream 222270 2038470 ~ 2046247 (-) True AMCG00014116
AMCG00014114 mRNA downstream 230696 2032712 ~ 2037821 (-) True AMCG00014114
AMCG00014138 mRNA upstream 46119 2325102 ~ 2339187 (-) True AMCG00014138
AMCG00014134 mRNA upstream 252971 2531954 ~ 2540358 (-) True AMCG00014134
AMCG00014132 mRNA upstream 263935 2542918 ~ 2548184 (-) True AMCG00014132
AMCG00014131 mRNA upstream 283550 2562533 ~ 2570391 (-) True AMCG00014131
AMCG00014141 mRNA upstream 295480 2574463 ~ 2576803 (-) True AMCG00014141
TU84738 other downstream 350335 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 365902 1900640 ~ 1902615 (-) True G67832
TU84719 other downstream 375964 1892063 ~ 1892553 (-) True G67835
TU84716 other downstream 385567 1879203 ~ 1882950 (-) False AMCG00014108
TU84711 other downstream 397363 1869850 ~ 1871154 (-) False AMCG00014105
TU84851 other upstream 261334 2540317 ~ 2542697 (-) False AMCG00014134
TU84998 other upstream 362076 2641059 ~ 2643907 (-) False AMCG00014144
TU85055 other upstream 546579 2825562 ~ 2829144 (-) True G68088
TU86038 other upstream 5099105 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 5138615 7417598 ~ 7423291 (-) False AMCG00014278

Expression Profile