RNA id: TU84738


Basic Information

Item Value
RNA id TU84738
length 1456
RNA type TUCP
GC content 0.63
exon number 1
gene id G67843
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1916727 ~ 1918182 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGACGCTGCATCCAACCCCCCCTGCCTCGGCAGGCCGTTCTCCTTCACCATCGTCAGGCCGGGCACCCCCTCTGGCTCAGtgtccccccccacctcactcTCACTGCTCACCTCCTCACTGCCTCCTGCCGCCTCCTCCCCTGCCTCTCCCTTGCCCTGTCCTTCTTCTGCTACTTCTATCTCTTCCTCAGCCTCtacctctccctgtccctcagCTTCTTCCTCTACCTCTCCTTCAGCCTTTTCCACTCCACTCCCCTTTCTCactccctctgtctctttctctccctctgcctcatTTTCTCCTTCTCCATCATCCTCagtcttcccctctccctctgcctcgGTCTCTACCAGTGCCTCTTCCTCTGACTTGGTGTCTCCCTTTGACTCTccctcgttctctctctctccctctgcctcagtctctccctctgtctctctctctccctctgcttcggtctctcccactcccactccctctgcctctgcccCAGTCTCTCccttggtctctctctctcccgctgcctctccctcctcctctctccactCCGGCTGCTGCTTTTCCTCCTCAGACTTCACCTCctctccacccccacccccctggcAGGGCTCCGGAGAGGCAGCCTGCTCCCCATTAGCCTCCTGCCCCACTGCGGATACAGCACCTTCTTCCACctttccctctccttcctcctctccctctgccgactgctctttctcctcctcttcctcctcctctgcttcctcccctccctctgtctgtcctgactgctctttctcctcctcttcctcctcctctgcttcctcctctccctctgtctgtcctgactgctctttctcctcctcttcctcctcctctgcttcctcctctccctctgtctgtcctgactgctctttctcctcctcttcctcctcctctgcttcctcctctccctctgtctgtcctgactgctctttctcctcctcttcctcctcctctgcttcctcctctccctctgtctgtcctgactgctctttctcctcctctgccgcctcccctcctctctctccctctccctccgcTCCCTCTTCCCCGTTGGCTGTTCCGATGCCCTCGGCGGGGGTGTCCGCCACTTCGTCCTCCTGCCCCGGGCTGGGACTCTCCTCCTGCTCGCCCTCTGCGCCTTTCCCTGCTCCCGGGCCGCCCTGCTCTGGGCTGGGGTCTCCGGCGCGGGGGATCAGGTCTCCGTTGGGCAGCTCCAGGTCGGGCGTCGGGCCGGCCACCACAGGCTGCACCAGGGCCATGCTGTCAGGAGTGCGGCAGATCGGAAGCGTGAGAGAGCTGGACCGGGTGTGTGGGCAGCCGCGAgtcgctctgtctgtctgtccgtctgtctccGCTGGCTGACTGGCTGTCTGGCTGACCGTCTGCTGCTCCAGCTGTATCCCTGTGGACACTGTGCCTGTCTctccc

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84715 lncRNA downstream 33777 1879203 ~ 1882950 (-) False AMCG00014108
TU84693 lncRNA downstream 94968 1820612 ~ 1821759 (-) False G67818
TU84694 lncRNA downstream 94968 1820612 ~ 1821759 (-) True G67818
TU84597 lncRNA downstream 350387 1564787 ~ 1566340 (-) False AMCG00014098
TU84536 lncRNA downstream 818748 1097656 ~ 1097979 (-) True G67691
TU84744 lncRNA upstream 23845 1942027 ~ 1942420 (-) True G67849
TU84795 lncRNA upstream 138667 2056849 ~ 2059491 (-) True G67881
TU84803 lncRNA upstream 167929 2086111 ~ 2087121 (-) False AMCG00014119
TU84811 lncRNA upstream 176885 2095067 ~ 2124907 (-) False AMCG00014119
TU84810 lncRNA upstream 177124 2095306 ~ 2095631 (-) False AMCG00014119
AMCG00014110 mRNA downstream 1137 1906150 ~ 1915590 (-) True AMCG00014110
AMCG00014107 mRNA downstream 12994 1903416 ~ 1903733 (-) True AMCG00014107
AMCG00014109 mRNA downstream 17818 1895665 ~ 1898909 (-) True AMCG00014109
AMCG00014108 mRNA downstream 31295 1879208 ~ 1885432 (-) True AMCG00014108
AMCG00014105 mRNA downstream 43305 1870237 ~ 1873422 (-) True AMCG00014105
AMCG00014115 mRNA upstream 111408 2029590 ~ 2031527 (-) True AMCG00014115
AMCG00014117 mRNA upstream 114059 2032241 ~ 2032429 (-) True AMCG00014117
AMCG00014114 mRNA upstream 114530 2032712 ~ 2037821 (-) True AMCG00014114
AMCG00014116 mRNA upstream 120288 2038470 ~ 2046247 (-) True AMCG00014116
AMCG00014119 mRNA upstream 167759 2085941 ~ 2124953 (-) True AMCG00014119
TU84714 other downstream 14112 1900640 ~ 1902615 (-) True G67832
TU84719 other downstream 24174 1892063 ~ 1892553 (-) True G67835
TU84716 other downstream 33777 1879203 ~ 1882950 (-) False AMCG00014108
TU84711 other downstream 45573 1869850 ~ 1871154 (-) False AMCG00014105
TU84685 other downstream 47279 1866394 ~ 1869448 (-) True G67813
TU84851 other upstream 622135 2540317 ~ 2542697 (-) False AMCG00014134
TU84998 other upstream 722877 2641059 ~ 2643907 (-) False AMCG00014144
TU85055 other upstream 907380 2825562 ~ 2829144 (-) True G68088
TU86038 other upstream 5459906 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 5499416 7417598 ~ 7423291 (-) False AMCG00014278

Expression Profile