RNA id: AMCG00014116


Basic Information

Item Value
RNA id AMCG00014116
length 5922
RNA type mRNA
GC content 0.65
exon number 11
gene id AMCG00014116
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2038470 ~ 2046247 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGCAGCCATGGGGGACTGCAATGAGCCGACCGCACGACCCCAAGCTGCCCCTGCCCCCACTGACACCCTGGAGCGCCCCCACACCCAGACAGGCAaATTGCGGTGCTCCGCTGTGGAGAGCCGTGCCCCCCGCGCCGTGCGTCAAGGGAGTGAGCGCGTGTGTTGTGGACGCACAGGAGGCCGCGGCCCCGGAGAGCACGCCTCCCCCGGAGGAGGTCGCCAGCAAGGAGGGCAGCGAGACGCCGCGCAAGAAGAACAAGAAGCACAAACGGCACAAaagcaagaagaaaaagaagaaacgCAAAGAGGAGAAGAAGTGCCGCTCGGGGTCGGAGAGCAGCTCGGAGTCCGGGCTGGAGTCGGATGGGGAGTCTCGAACCCGAGCCAGCGTGAAGAGCGACGCTCAGCCCCACACAGAGGCCCCCGGGGCCCCGGAGAAGAGCGTCAAGGAGGGCGGCTCGGAGAGGACAGAAGCCCTGGCCTGCGGTCCCGACGAGAAACAGGGCGGCGCTCCGGCAGGCGAGTGGtggggccgggccgggccgtgCGGGGCCACGCTGCTACAGACCAGTCCGGCTGCAGACGAGGCCGAGAGCAAGAGGAAGTCGAAAAGACATTCaagcaagaagaagaagaagaggaggaggaaagaggaagaaaaagaagagaagcaATCTCCTTCTCACTCGAAGTCGGAGAGCACCTCGGTTTCCGGGTCCGAGTCAGAGTCCGAGTTGAAGCCTTCCTCTCGGCCACCCCCCCCCTCGCCCCTGGTCTCTGCGGACAAGCCCCGGGAAAGGCTGCCAGCCGAGCCCCTGCCGCAACCTGCGCCGGGGGTCAGCGAGATGCTGGGCAAGGTGGTCCCCGCGACCACCGCGGAGGGGGAGTCCAGCGAGAGTGTCGTCGAAACGCGCCTCGCATTACACGCAGTGGAGGAGATGTCCTCGGAGCAGAAGCCCGGCGCGGCAGAAGGCAACGCCTCTGGGTCCGAGTGTGCCGATGCCGTCAATCCGTCTAAAGCTCAGGACCTGCCGGATATAATCCCTAAAATAGACGCCGCACACAGCGAGGAGAACGCCCCCAAGGACAAGGAGGCGGAGGCCAAGCCAGACCAGGACTGGGACGGCCCGCCAGAGGAGAAGAGCGACAAAGGCAGAGAGAAGCAGAAGGCCCGCCGCAGCCCCTCGGCCTCGCGCTCCCGGTCCCGGTCCAAGAAGCGTGGCTCGCAGCGCACCCCGTCGAAGAAGAGTCGCAGCCGCTCCCGCAGCCGCAAGCGCCTGGCCGCCAGGTCCGCAGCCCGCAGAGGCCGCTCCTCCTCCAGGAAGATCAGCCCCCGCCGGCGGCGCTCCAGGTCCCGCTCCGCCCGGCGTCGGTCCCGTTCCCGCTCCGTGCGCCGCTCTGGACGCCGGTCCCGCTCGGCCTCGCCCAAGAGGAGCCGGCGGTCCCGCTCCCGCAACAGGAGGTCCAAGTCCTACTCCCCGCGGCGCGCACGGCGTTCCCGCTCGCTCTCCCGGCGCCCACGCTCCCGGTCCAGGAGGTCCCGATCAGCCCGTCACGTCAGGAGGTCACTCTCCAGGTCCCCAGTCAGAGTGCGCCGATCCCGCTCCAGGTCACGCAGGTCCAGGTCAGCCCGCAGGACCCGGCGCTCTCGGTCCCTGTCAGTTCGCAAGACCCGGCGCTCCAGGTCCAGGTCTCGCTCCCGGAACCGGCGGTCCGTCTCCCGCTCTGTCACCAGGCCCCGGCGCTCGGCTTCCCGCAGCCGCAGGTCGCGCTCCAGGTCGCGCAGGAGGGCCCGGCGCACGCGCTCCCGATCCGTGGTCAGAGCCAGGCGGTCCAGGACCAGGTCTCCTCGTAGAGCCAGGCAATCCAAGTCCAGGTCGCCGGCAAGGCGGGCGCGGTCTGGGTCACGTTCTGCAAGGAGGGGCCGGCGTTCCAAGTCCAGATCCCCCAAGAGGACCAAGCGCTCGAGGTCCCGGTCGCCCGCACGTCGCAGGAGGTCCAAGTCCCGGTCCCTCCGACGCGGCAAGCGCTCGAAATCCAGATCCCAGTCCCACCGGCGCCGCTCCCGCTCACAATCGCTCAAAGTGAAGAAGCTGTCCAGGTCCCCATCGCCCAAGCGTTCCAAATCCAGGTCTGTCGTGAGAGACAAATCTAAATCCCGATCAGTCTCCGGAGACAGGCGGTCCCCAGCCAAAGACCGGAGCTTAGTGGGCGCGTCCCCTGCGGGAGGCCCCGTGGGGCCGCTCCTCTCGGCAGCCGTGCCAGACGACGCGCATCCTACTGGAGTGGAGGTGTCCCTCGTCGCCAGAGAGAGCTTGGCAGAAGAGCCTTCAGGGGCAGTGGAGTCCAGTCCATCCCAGCCCGGCGCTCTGTTTGGCCCCGTGGTCCCCCCAGTCGCATTGCCTCTGCCTTTGGAAAGCTCGGATGCAGCATCTGGGGCTCCGGAGCAGGAGATGGAGACGGTGGTCCTGTGTGGGCCATGGAAGCCTGTCCCCCCCTTGATAGACAACAGTGTGACGTTGAAGCTGCAGGCCCCCCCTCCTGAAAGGCCTGTGGCCCCTGCGGTGCAGATGACGAGCATTGGCCCTATGAATGAGAAACCAGCTGAGGGAAAAGCTCTCGAATGTACATCTCTCCAGAAGGACCCGACTTTGAAGCCAGAATCGCCTGCTGTCGACAAGTGCTTTACTCATGAATTGCCTTCCACAGAGCGGGGCTCTACGTGCCCCGGGCCCGAGCAGCCCCTGGCCCTGGGTCCTTCCACTGCAGGGGGGTGGTCGAAACCCTGCACCCAGCCCCCCGAGAGCTCGGATGACAGTGGGTCGTTGTCTTCCACGCCTCAAGGAAGACCGAACCCAtctccgtctccctctcctgagcaacatttaaaatctgCCTCCCCGACCAAAGAAGCGCCTTCCAGGTCTCCTTCGCCACAGTCTGGCCGAGTGTCGCGGTCTGCACCCCCTGCTCCCCACAGAAGTTCCCGGTCTCCCCCTGTCCCCATCCCCATGCAGGCAGAACGCAGCATCCCTGAGGACCACCTGTCTCCCCCTGTCCCCATCCCCATGCGGGCAGAGCGTAGCGTCCCTGAGGACCACCTGTCTCCCCCTGTCCCCATCCCCATGTGGGCAGAGCGCAGCATCCCTGAGGACCACCTGTGTTCCCCTGTCCCCATCCCCATGCGGGCAGAGCGTAGCGTCCCTGAGGACCACCTGTCTCCCCCTGTCCCCATGCGGGCAGAGCACAGCGTCCCTCAGGACCACCAGTCTCCCCCCGTCCCCATGCAGGTAGAGCGCAGCATCCCTGAGGACCATTGGTCTCCCTCGCCCCTCGTCTCCGACGTCCCTGAGGACCACCAGTCTGCCCCTGTCCCAGCGTGGGCAGAACGCAGTGTCCCTGAGGACCACCGCCCCCCCGCGAACCACGCCAGTTCTGAGACTAAATCTTCCGTGGGACTACATTCAAGGTCCCCCAGCCCCCGCCAGGGTAAAACCTCAAAATCTGGAACCAACCGCTCCAGGTCAAGGTCCCCGAGCCCCCGCCCGGCTGACCTCTCGAAATCCGGAACCGACCGCTCCAGGTCAAGGTCCCCGAGCCCCCACCCGGCTGAAATCTTGAAATCTAGAGCCGACCGCTCCAGGTCAAAGTCCCTGAGCCCCCGCCCGGCTGAAATCATGAAATCTAGAACCGACCGCTCCAGGTCAAAGTCCCCGAGCCCCAACCCAGCTGAAATGGTGAAATCCAGAACCGACCGCTCCAGGTCAAGGTCCCCTTCAGTGGAACCCAAACCATCCACCAGGAAACCACACTCGCGATCCAGATCAGTGTCCGTGAATGAAGATGCCAAGTcgacaaaacaaaagaaacgcTCAAAGTCCAGGTCTCCTACCAGGAAAAAGAAATCCAAGTCCAGGAAAAAGAAATCCAAATCCAGGTCTCCTACCAGGAGGAGGAAGTCTAAGTCTCCTGCCAGGAAGAAGAAGTCGAGGTCCAAGTCTCCCGCACGGAAGAAGCGGTCAAGATCAAAATCGGTGTCTCGGAGGAAGCGTTCAAAATCTCCATCTACCAGCCACAGGAAGAAGTCGAAATCGGCGTCTccggtgaggaagaggaggtcCACCTCTCGCAATCGCAAGAGGAAGTCCAAATCCAAGTCGCCCGCCAGGAGGAAACGGTCAAAAACCCGTTCACCAGTGAGAAAGAGGCAATCGAAGTCCCGATCGGTGACACGAACCAAGCGCTCTAAATCTCGCTCGCCCAAGAGGAAGTGGTCCAAGTCCCGCTCTCCGGCCAAGAGGGGCAAGCGGTCCAAGTCCCGCTCTCCGGCCAAGAGGGGCAAGCGGTCTAAGTCCCGCTCTCCGGCCAAGAGGGTAAAGCGGTCGAAATCCCGCTCGCCGGCGAAGAGGAGCAAGCGCTCCAAATCCCACTCGCCAGTGCGCAAGAAGAGGTCCAAGTCCGCGGAGAAGGGCAAGCGCTCCAAGTCTCGCTCCCCGGGCCGGAAGAAGCGTTCGCGGTCGCGCTCGGCCTCCAAGCACCGGCGCAAGTCCCGCTCCAGCTCGCGCGGCCGCCGCTCCAGCTCGCGACGCCGCCAGGCCCGGACCCGCTACCGCAGCCGCTCCATCGACCGGTGGCGCCGGCGCGGGCCCAGCCACTCGCCCATCCTCATCCTGCGCCGCCGGAGATCCACCTCGCGCGCCCGCCGCAGCTCCAGCAAGACCCCTCCGCGTCTCACGGAGTTGGACAAGGACCAGCTGCTGGAGATCGCCAAGGCCAACGCTGCAGCCATGTGCGCCAAGGCGGGCGTGCCCATCCCGGAGAGCCTGAAGCCCAAGGCCATCCTGCAGCTACCCCTGCCGCCCCCAGTGCTGCCCCTgtccctgcccctgcccctgccgcTCCCCATGAGCCTGCCCATGAGCCTGTCCATCAACCTGCCCAACATGAACACCCTGCCCTCCATGAGCGCCATGCCCTCCATGGCCAGCATGCCCTCCATGTCCAACATCCCTGCGCCACTGCCCATCGAGGAGGTGAAGAGGAAGGTGGCACAGAAGGCCAACAGCATCAGCATCAAGGAGCTCACCGAGAAGTGCAAGCTGATCGCGGAGAGCAAGGAGGACGAGAACGAGGTGCTGAACAAGCCGCACGTGTCGGACGACGAGGACGACGAGCGACCCTTCGGCCAGGGGCTGCGCATGGGCGAGAGCAAGGGCATCTCCTTCAGCCTCAGTGTAAGACGCCCCACAGCGCAGCACAGGGCACAGACGGGCACGGGGCACAGCGCAGGGCCCCGCGCACGTCCGAGTCCTGGAGTCTGTTACTCAGATCATGTGACCCCCAGAGCCCCTCCCAGTCCTGCAGACAGTGCAGTGTCTAATGCCCCCGCTATACTGCCCCCCGGTCCCGTGTCTAACCCGGCGCCGCTCTCCCTCCAGAACCCGTCGGCGAAGCCGGTGGCGCGGACCGAGGTGGCGCTGACCAAGGAGTTCCCCGTGTCGTCGGGGTCGCAGCACCGCAAGAAGGAGGGCGACGGCGCGTACGGGGAGTGGGTGCCCGTGGACACGGCGGCCGGCAAGGACAAGAAGGACGACGTGTTCACCGACACGCCTGTGCAGCGCACCGAGCTAGAGACGGTCACTACCCCCCGCCCTCAGTCCCCCCCCTACGGGCCCCCTGCCAGGCTGCTGTCGCCAGCACACCCACGGACACGGGTCTGTGGGCCGGCAGGGGGCAGTGCCCGCTCCCCTAGCCAGGCAGAGCAGCGTGCCGGTTTAACCAGGCCCCCTGGCCGCACAGTGCACACCGCGCTGGAGCCCCCCATCCTGGCAGCCCCCGAGTCCTGGCCCTTTCGGTACTTCAGCGTGTGGAAGCTCCATAACCAAAATCGCTGGACATTCACTGGTTTAAGCGCCTAA

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84744 lncRNA downstream 96050 1942027 ~ 1942420 (-) True G67849
TU84715 lncRNA downstream 155520 1879203 ~ 1882950 (-) False AMCG00014108
TU84693 lncRNA downstream 216711 1820612 ~ 1821759 (-) False G67818
TU84694 lncRNA downstream 216711 1820612 ~ 1821759 (-) True G67818
TU84597 lncRNA downstream 472130 1564787 ~ 1566340 (-) False AMCG00014098
TU84795 lncRNA upstream 10602 2056849 ~ 2059491 (-) True G67881
TU84803 lncRNA upstream 39864 2086111 ~ 2087121 (-) False AMCG00014119
TU84811 lncRNA upstream 48820 2095067 ~ 2124907 (-) False AMCG00014119
TU84810 lncRNA upstream 49059 2095306 ~ 2095631 (-) False AMCG00014119
TU84833 lncRNA upstream 303878 2350125 ~ 2373329 (-) True G67911
AMCG00014114 mRNA downstream 649 2032712 ~ 2037821 (-) True AMCG00014114
AMCG00014117 mRNA downstream 6041 2032241 ~ 2032429 (-) True AMCG00014117
AMCG00014115 mRNA downstream 6943 2029590 ~ 2031527 (-) True AMCG00014115
AMCG00014110 mRNA downstream 122880 1906150 ~ 1915590 (-) True AMCG00014110
AMCG00014107 mRNA downstream 134737 1903416 ~ 1903733 (-) True AMCG00014107
AMCG00014119 mRNA upstream 39694 2085941 ~ 2124953 (-) True AMCG00014119
AMCG00014118 mRNA upstream 105638 2151885 ~ 2154746 (-) True AMCG00014118
AMCG00014133 mRNA upstream 130572 2176819 ~ 2177304 (-) True AMCG00014133
AMCG00014136 mRNA upstream 222270 2268517 ~ 2278983 (-) True AMCG00014136
AMCG00014138 mRNA upstream 278855 2325102 ~ 2339187 (-) True AMCG00014138
TU84738 other downstream 120288 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 135855 1900640 ~ 1902615 (-) True G67832
TU84719 other downstream 145917 1892063 ~ 1892553 (-) True G67835
TU84716 other downstream 155520 1879203 ~ 1882950 (-) False AMCG00014108
TU84711 other downstream 167316 1869850 ~ 1871154 (-) False AMCG00014105
TU84851 other upstream 494070 2540317 ~ 2542697 (-) False AMCG00014134
TU84998 other upstream 594812 2641059 ~ 2643907 (-) False AMCG00014144
TU85055 other upstream 779315 2825562 ~ 2829144 (-) True G68088
TU86038 other upstream 5331841 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 5371351 7417598 ~ 7423291 (-) False AMCG00014278

Expression Profile