RNA id: AMCG00014114


Basic Information

Item Value
RNA id AMCG00014114
length 2254
RNA type mRNA
GC content 0.62
exon number 3
gene id AMCG00014114
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 2032712 ~ 2037821 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGAAGAGCAGTGGGTGGAGAAACTCCTACACTGGAGAATTCCTGGCTTTTAAACCCGGCAGAGGCGGCCCAGGGAGGCAGCTGAGCACAGTGTTGGGTTGGCTTCGGCCCTGGTGCCCCACTACCCTGTTTGTATCTGAACAAAGCTCTGTAGCTCTGCGGTGTGAGCCTGTGGACATCACGCTGGCAATGAGCGAGAGAGCCGTGGCACAGAAGAGGCTGGCCGAGAACCCCTTCGACGTCAACGCCATTTGCATGCTGAGTCGGGCGCAGGAGCAGGTGGACGCGTGGGCCCAGTCCAACACCATGCCGGGCCGCTTCACGGGCTCCACGGGAGCACAAGTGCTGACCTCCGAGGAGCTGTCCAACAGCGGACCACAGGCCTGGATCAAGAAGGTAATGCGCTCTGCCCAGCCCTCCCCCCGCACCCCCGGCACACTGCACTGAccgagagagcgagcgagagagagaggggcccTCTGAggctgtgtgagagagtgagtgagtgagagcaGAGCACCCTgacccctgccctgccctgcccgcCAGCAGACCCCTGCCATCCCGGTCTCTCCCTCAGTACAGCACAGGAGGCAGCGCTGCCCGTGTGGGAGTCCTCAGCTGTGGCCTGTAACACGGGACGTAAAAGCAcaacacatgcacgcacacacacacacacacacacacaacctctcAGATTCGTCTCACTGGTGGCGGAGCTTCTTTCTCTAACGGGAACAGAAACCAGCCTCCAGGCTCATCACACAGTCGCATGCTTCGCTGACAGGGTGCTGGCGATGACAGTTCACGGCACGAACACCGGAGCTTCCTGCTGACACACGCGATCACCAGGTGACCCGAGAGACGAGAGGTTCTTAATTAGCTGATCACACATGCTCTGTAGCACCCAGCACTCTTCACCACTGGATCAGCCCTGCATCTGTTGCATTGAACACACTCAGCCACACCGACATGGCCCAACACCAAGCCTCGCCACCCCCCATCCCCTGCTCTGTGGTGTGATCTGTGTCCTCAACCCTCCTCCTCGCCTCACGGGCCGCCTCGCCCTCGGAGGCAGCCTGTGGGGCCCTGATGTCTGTTTCGTGTGTGTCCAGTGGTGTCATCAGTTCACAGAGCCAGCTGCGGAGCTCCTGCGGTGGCCTGCCCTGGTTCCCGAGACTGCAGATTAAGCCCCCGTCTGCGGACACCCCCGCTCCAGCGGAGGAAGCCGGGCTGGGGACGTGCAGTGGCAGTGGCAACTCCCTGCTGCAACATGAGTCCCAGAGCAGAGCAGCTGATTTGCCCACCCAAAGATATTGATCTAGTTCTAGATGAGACCCATGTGAGAGTTGGCACGGCCCAGAGCCCCCCTGTGTCACCGCATGGACGCCAGCAGCCCCCGGTCCCCCCGCGCTCCCTGTGAACTGGCTACACCACTGGACACTGTTAAACAGATGTTGATGTTGAACATTTTATCAAAGCAGGTACAAAACAGGATGGGCACCCCGGGCCCCTGGCAGTGGGGTATTTATCAGGCTGCATGGTGCCCTCTTTTGCTAAAAAGAGGCTCCTTGGAAAAGAGacaaacaaagagagagagagagaaagagagagagagagggggaggaaagTTGGAAGTAAGTACGTCTGTCAATCCACCCTCTACCAGGTCTGGTGCGGCCGTGCGGGCCCTGCGCTGCGGACAGAGCCGCCCCCGCGGACCGGGAGAGTCTGGAGCGTCGGGACCCCCCGATCCACCTCTGACCCCCAACCTGTCTTAATGCCATCATGTGCGCGGCAGCTGTTCCCCCGCGCCCCGCCGAGGGTCTGAGTGCACCACATGGCCACGGCACAGGGTGCCCAGTGATGCGGTGTAGTCAGACCCTCGATCAGCCCGGACCCCTCGGCCCCCTCACCGCTGCCTCAGTGGGAGGAGCACCGGGGGGCTTGCTGTGCGCTGGCAGGAGGGTGGGGGGCAGCCTGTCCTCGCAATAATGGCATTAAAGCTGCCCAGAGCGGGGGGAGATGCCTGTCCTTCCTGTCCGCTCCTCTGCCGGGTTTTGGGCCCAACCCCCTTGCTAAGCAGTTCGGGAGCCGTCTGTGTccaatgcccccccccccggggCTGAAGAGGAGGCTGTGGTGCGAGTCTGTGGAGTATGAGGGGGGGCCGGGGCCGGGAGAGACGGACCCCCGGGGGTCTCTGAGTCGGGCGGCTCTTCAGcgctgtgtcagtgtgctgcaATGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84744 lncRNA downstream 90292 1942027 ~ 1942420 (-) True G67849
TU84715 lncRNA downstream 149762 1879203 ~ 1882950 (-) False AMCG00014108
TU84693 lncRNA downstream 210953 1820612 ~ 1821759 (-) False G67818
TU84694 lncRNA downstream 210953 1820612 ~ 1821759 (-) True G67818
TU84597 lncRNA downstream 466372 1564787 ~ 1566340 (-) False AMCG00014098
TU84795 lncRNA upstream 19028 2056849 ~ 2059491 (-) True G67881
TU84803 lncRNA upstream 48290 2086111 ~ 2087121 (-) False AMCG00014119
TU84811 lncRNA upstream 57246 2095067 ~ 2124907 (-) False AMCG00014119
TU84810 lncRNA upstream 57485 2095306 ~ 2095631 (-) False AMCG00014119
TU84833 lncRNA upstream 312304 2350125 ~ 2373329 (-) True G67911
AMCG00014117 mRNA downstream 283 2032241 ~ 2032429 (-) True AMCG00014117
AMCG00014115 mRNA downstream 1185 2029590 ~ 2031527 (-) True AMCG00014115
AMCG00014110 mRNA downstream 117122 1906150 ~ 1915590 (-) True AMCG00014110
AMCG00014107 mRNA downstream 128979 1903416 ~ 1903733 (-) True AMCG00014107
AMCG00014109 mRNA downstream 133803 1895665 ~ 1898909 (-) True AMCG00014109
AMCG00014116 mRNA upstream 649 2038470 ~ 2046247 (-) True AMCG00014116
AMCG00014119 mRNA upstream 48120 2085941 ~ 2124953 (-) True AMCG00014119
AMCG00014118 mRNA upstream 114064 2151885 ~ 2154746 (-) True AMCG00014118
AMCG00014133 mRNA upstream 138998 2176819 ~ 2177304 (-) True AMCG00014133
AMCG00014136 mRNA upstream 230696 2268517 ~ 2278983 (-) True AMCG00014136
TU84738 other downstream 114530 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 130097 1900640 ~ 1902615 (-) True G67832
TU84719 other downstream 140159 1892063 ~ 1892553 (-) True G67835
TU84716 other downstream 149762 1879203 ~ 1882950 (-) False AMCG00014108
TU84711 other downstream 161558 1869850 ~ 1871154 (-) False AMCG00014105
TU84851 other upstream 502496 2540317 ~ 2542697 (-) False AMCG00014134
TU84998 other upstream 603238 2641059 ~ 2643907 (-) False AMCG00014144
TU85055 other upstream 787741 2825562 ~ 2829144 (-) True G68088
TU86038 other upstream 5340267 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 5379777 7417598 ~ 7423291 (-) False AMCG00014278

Expression Profile