RNA id: AMCG00021374


Basic Information

Item Value
RNA id AMCG00021374
length 749
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00021374
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16011194 ~ 16016920 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCTCCTGTCAAAATAAGGGGCGGGGTTACAGCGATTCCTCGATGCCCATTGGCCAGGGTGCTGCGGAGGGGGCGGGTCTACTCTACTCTGCTGCTGTCTCGCTGCCTTCGCGGACCCCGGGGTGGCTGCTCGAAGCTGAAAATGTCGGAGCCTACAGTAGCTGACACTCGCCGGTTAAACTCCAAACCTCAGGACCTCACGGACGCCTACGGGCCTCCTAGTAACTTTCTGGAAATAGACGTTTACGACCCACAGACCATCGGGGTAGGGAGGAACCGCTTTACCACCTACGAAGTGCGGATGCGGACAAACCTCCCCATCTTCAAGCTGAAGGAGTCTTGTGTCCGGAGACGGTACAGCGACTTTGAGTGGTTAAAGAAtgagctggagagagacagtAAGATTGTGGTGCCCCCTCTGCCTGGGAAAGCCCTGAAGAGACAGCTGCCCTTCCGAGGAGACGAGGGCATCTTCGAGGAGTCCTTCATCGAGGAGCGGAGGCTGGGCCTCGAGCAGTTCATCAACAGGATCGCAGGACACCCCCTGGCACAGAACGAGCGCTGTCTGCACATGTTCCTCCAGGAGGAGAGCATTGACCGGAACTACATCCCTGGAAAAGTACGCCAGTAGGGGGCGCCGCTCTCCACTCTTTTCTTCCATTCCACCCTTCCACCTGcgcaaaataacatttatttttacactaaaatatatataattatatataaatataaaaaataaaaacaac

Function

GO:

id name namespace
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17918 SNX3_12; sorting nexin-3/12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106784 lncRNA upstream 88473 15920739 ~ 15922721 (+) True G85552
TU106723 lncRNA upstream 255762 15753082 ~ 15755432 (+) True G85507
TU106713 lncRNA upstream 434676 15575549 ~ 15576518 (+) True G85497
TU106625 lncRNA upstream 444368 15515453 ~ 15566826 (+) True G85426
TU106874 lncRNA downstream 123603 16140523 ~ 16169886 (+) True G85623
TU106936 lncRNA downstream 272829 16289749 ~ 16292193 (+) True G85674
TU107030 lncRNA downstream 530737 16547657 ~ 16549345 (+) True G85746
TU107041 lncRNA downstream 552527 16569447 ~ 16569650 (+) True G85757
TU107042 lncRNA downstream 555273 16572193 ~ 16572868 (+) True G85758
AMCG00021370 mRNA upstream 23582 15981081 ~ 15987612 (+) True AMCG00021370
AMCG00021367 mRNA upstream 71894 15935436 ~ 15939300 (+) True AMCG00021367
AMCG00021368 mRNA upstream 79601 15927660 ~ 15931593 (+) True AMCG00021368
AMCG00021369 mRNA upstream 101638 15898157 ~ 15909556 (+) True AMCG00021369
AMCG00021371 mRNA upstream 120048 15890880 ~ 15891146 (+) True AMCG00021371
AMCG00021372 mRNA downstream 5438 16022358 ~ 16037784 (+) True AMCG00021372
AMCG00021375 mRNA downstream 31596 16048516 ~ 16059328 (+) True AMCG00021375
AMCG00021373 mRNA downstream 46579 16063499 ~ 16073621 (+) True AMCG00021373
AMCG00021384 mRNA downstream 86053 16102973 ~ 16103209 (+) True AMCG00021384
AMCG00021383 mRNA downstream 89578 16106498 ~ 16107682 (+) True AMCG00021383
TU105723 other upstream 3910487 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 5024020 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 6587775 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 7377784 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 8889957 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 46680 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 573261 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 639724 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 639724 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 980957 16997877 ~ 17004131 (+) True G85869

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034650 False 1294 mRNA 0.43 4 NC_007131.7 32406011 ~ 32432871 (+)