RNA id: AMCG00021390


Basic Information

Item Value
RNA id AMCG00021390
length 549
RNA type mRNA
GC content 0.68
exon number 2
gene id AMCG00021390
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16183823 ~ 16184805 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCCGTCCGTCCTCAGCGGGCGGAGCGGGCGGAGGACTCGGAGCTGGGAAAGCGGGCGGCGGAAAGCACGGAGGCTCGGTCGGggctgccgccgccgccgctgccgCTGCCGCCGCGGCCGCAgcagccgccgccgccgccgccgccgccgccggaGTGTCTGGGTCGGCGGCCGTCTCTGGCTCGGCCACCCCCGTCGCTGCTGCCGCCCTGCCCGCCGCTGCCCTCCCGGCCCAAGCGGCGGAGTTGACAGCTCTGTTCGAGTGCCCGGTGTGTTTCGACTACGTGCTGCCGCCGATCTTGCAGTGCCAGGCCGGCCATTTGGTCTGCAACCAGTGCCGGCAGAAGCTGAGCTGCTGTCCGACCTGTCGCGGCCCTCTGACGCCCAGCATCAGGAACTTAGCCATGGAGAAAGTGGCCTCGACACTTCCCTTTCCCTGCAAGGGCTCGGAGGCGTGTTGTGATGAAGGGAATCGATATTATTGGCAGGTCGGCAATCTGCAGAAAGCTGGAGGCTTTGCGATTGACCAGTACAGTACTGCATAG

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0007093 mitotic cell cycle checkpoint biological_process
GO:0005634 nucleus cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106874 lncRNA upstream 13937 16140523 ~ 16169886 (+) True G85623
TU106784 lncRNA upstream 261102 15920739 ~ 15922721 (+) True G85552
TU106723 lncRNA upstream 428391 15753082 ~ 15755432 (+) True G85507
TU106713 lncRNA upstream 607305 15575549 ~ 15576518 (+) True G85497
TU106656 lncRNA upstream 620906 15561745 ~ 15562917 (+) True G85455
TU106936 lncRNA downstream 104944 16289749 ~ 16292193 (+) True G85674
TU107030 lncRNA downstream 362852 16547657 ~ 16549345 (+) True G85746
TU107041 lncRNA downstream 384642 16569447 ~ 16569650 (+) True G85757
TU107042 lncRNA downstream 387388 16572193 ~ 16572868 (+) True G85758
TU107044 lncRNA downstream 399512 16584317 ~ 16584765 (+) True G85760
AMCG00021380 mRNA upstream 2001 16176362 ~ 16181822 (+) True AMCG00021380
AMCG00021378 mRNA upstream 17663 16138851 ~ 16166160 (+) True AMCG00021378
AMCG00021377 mRNA upstream 52565 16125521 ~ 16131258 (+) True AMCG00021377
AMCG00021379 mRNA upstream 70403 16111308 ~ 16113420 (+) True AMCG00021379
AMCG00021381 mRNA upstream 72964 16110416 ~ 16110859 (+) True AMCG00021381
AMCG00021391 mRNA downstream 15140 16199945 ~ 16202371 (+) True AMCG00021391
AMCG00021385 mRNA downstream 38099 16222904 ~ 16232810 (+) True AMCG00021385
AMCG00021386 mRNA downstream 71660 16256465 ~ 16270872 (+) True AMCG00021386
AMCG00021389 mRNA downstream 103949 16288754 ~ 16289608 (+) True AMCG00021389
AMCG00021395 mRNA downstream 233418 16418223 ~ 16434076 (+) True AMCG00021395
TU106850 other upstream 110205 16063600 ~ 16073618 (+) False AMCG00021373
TU105723 other upstream 4083116 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 5196649 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 6760404 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 7550413 8631727 ~ 8633410 (+) True G84301
TU107049 other downstream 405376 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 471839 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 471839 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 813072 16997877 ~ 17004131 (+) True G85869
TU107506 other downstream 2063685 18248490 ~ 18249686 (+) True G86121

Expression Profile