RNA id: XM_043240746.1


Basic Information

Item Value
RNA id XM_043240746.1
length 2421
RNA type mRNA
GC content 0.43
exon number 8
gene id stk16
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4555505 ~ 4561710 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGGTTAAATCGGCAAGTGTGCGTCACGGTGACGTTTTCTTTGTACACGGAAGAAACCGGAGAAATCAGCGGAGGGCAGGGAGAGCGTCTCATGAGTGCCTCTTCTCCATCCATGGTGGGTCATAAGCAATGCTCCAGAGAAGATGGGACAAGCTCTGTGTATCTGCTCTCGCAGTGCCATCACCATTGACAACAAGAGATACTACTTCATCCAGAAACTAGAAGAAGGAGGTTTCAGCTACGTGGATCTGGTAGAAGGTGCACAAGATGGCCGTTTCTACGCTCTAAAGCGCATTCTCTGCCATGACCGCGAGGGCCGCAAAGAGGCTCAGACCGAGGTGGAGATGCACCGCCTTTTCAGCCATCCCAACATCCTCAGCCTGACCTCACACACCTTCATGGAGCGCGGCGGGAAGTGCGAGGCCTGGCTGCTGCTACCCTACATCAGTAAGGGAAGTCTGTGGTCCGTTCTGGAGAAGCTGCGGGATAAAGGGGGCTCTATGACCGAGGGCCGCATACTACACGTTCTGCAAGGCATCTGCGAAGGCCTCAGAGCTATTCACGATAAAGGCTATGCACACAGGGACTTGAAACCCACCAACGTTTTACTGGATGAGAACGATCGTCCCTTATTAATGGACTTGGGCTCCATGAACAAGGCCAGGATTGAAGTTCGAGGGTCACGGGAGGCCATGACGGTCCAGGACTGGGCCGCTCAGAGGTGCACCATCTCCTACAGAGCACCAGAGCTCTTTAACGTGGAGAGTCACTGTATCATTGATGAAAGAACAGACATTTGGTCTCTAGGCTGTGTGCTGTACTGCATGATGATGCTGGAGGGACCGTATGACCTGATTTTTCAGAAGGGTGACAGCGTGGCTCTCGCCGTCCAGAATCCGGTCTCCATTCCACAGCCGTGCAGTTATTCTCAAGGTCTTCAAACCCTCCTCAGCTCCACTATGGTGGCCAATCCTCAAGAAAGGCCCAGAATCAGCTGGGTCCTTGACCAGGTCCAGAACCTTCGGGACTTAAACGGTACAGACGTAGATACCGACAGAGTATGATGCTACCACTGAGATGGGATGTCCGTTTTTCAGTGGACTCTGGACATTTTGGACTATGCACTCCGACAAAAACAACCCACTGAACTCACAAGCCTTGCAAACATTTGCTCTGTCTTACCTCAGTGAGCTCAGCACGCCGTGAACATGATCACCCTAGCCTTCACGTCACTGTCTCATATCTCACCCCGAAATCCATATTGAgcgattaaattaaattctgatTTTGGAGTAAATTATGAAAAGGCATGTTCATGATTTAGCGGGATTCGCTGTTATGGCACACAATATACTGTTATGGCTCCTTTATCACAGGCACCGGTTACGTTTCATCaaagcagttgtttttaaaattgtaattcgGCTTATGTGTCCTTCAGATTTATTAGCTTGTACATTATGGAACCAAAACcgattttagatgttttaaggGATATTAGTTAGGTTATTTAAACGAGAGTAAAGCAAGTTTTTGGGGGACTTTGTGTTGTAAAAAGGCCCAAAGATAAAGCTGTGTTACTGCCATTGGACTTCATTTGTGAAACAAAAGACTAAATGGTTATGCATGTTGTAGCATTGAAAAATAGTTGTGCTCTAGTTTGAAGGAAAATGCCTGAAAATTCGTTTTAAGCAACTTGTTTGGCTGTATGCTCAGCTTTTATCAGCAAGTCACAGTGGTGTTAGTTATgctcagtatttttttcagattcGGAGAGGAtgtgtaaaaaattataatgccTCTCACAACTTTAACAGGTACACGTTCGTTTCATTTAGTATAAGTTTCTTACATTTGCTTACAGTATTAAggtgttctttaaaaaataatttctttaatttttcatgCCTAGGTCAGTTCTGTACTcggttattcatttattgtatctGAAGGCTTCGTGAGGATGAATATCAAAATAATGTCTgggttaataaataatattttgcatttgttggaTAGTTACTTTTTTGGCATTGATCATGAACCAGacttatttttaagagataTATGCATTACATTCTCTTTCATAATTCAGGACTAAATAAACCGAAGCATTCCATATAAATTGTAGTTGGAATTTTATCTGTGAATAAGGACCTACATGTgtttctgctttttgttttattttgtaacggCAGTAATTTTCAGATTTCTTTGTGTCGGCTGTTCTCATTTTGACTTGGATTTTGTCATGTTTCTAAAGGATGTTTTAACTTGTGGTTGAAATTCTGTTCAGGACTTATTAATTATGCAAACTTGTTAATTTATACGATATAAGACTTGAGACGTGTATTTCGGCATTCATTTACActtatttctttccttttataAACGGTGAATAAATTGTGACTGAAACGGCAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1227 lncRNA upstream 12557 4540990 ~ 4542948 (+) True G852
TU1232 lncRNA upstream 51684 4503532 ~ 4503821 (+) True G857
TU1231 lncRNA upstream 53028 4502241 ~ 4502477 (+) True G856
TU1187 lncRNA upstream 256307 4294053 ~ 4299198 (+) False G815
TU1218 lncRNA downstream 14434 4576144 ~ 4599814 (+) True G843
TU1222 lncRNA downstream 46821 4608531 ~ 4609874 (+) True G847
TU1244 lncRNA downstream 51862 4613572 ~ 4614130 (+) True G869
TU1246 lncRNA downstream 53108 4614818 ~ 4615402 (+) True G870
TU1249 lncRNA downstream 54408 4616118 ~ 4616939 (+) True G872
XM_043240593.1 mRNA upstream 819 4548452 ~ 4554686 (+) True tuba8l2
XM_043240733.1 mRNA upstream 56266 4495194 ~ 4499239 (+) True spry2
XM_043236152.1 mRNA upstream 323002 4221283 ~ 4232503 (+) True LOC122342374
XM_043249780.1 mRNA upstream 544135 4007775 ~ 4011370 (+) True LOC122352357
XM_043251222.1 mRNA upstream 737509 3804599 ~ 3817996 (+) True slitrk6
XM_043240557.1 mRNA downstream 28321 4590031 ~ 4597077 (+) True atic
XM_043240618.1 mRNA downstream 83224 4644934 ~ 4649367 (+) True LOC122346000
XM_043240644.1 mRNA downstream 90922 4652632 ~ 4657892 (+) True LOC122346016
XM_043240631.1 mRNA downstream 98160 4659870 ~ 4664510 (+) True LOC122346006
XM_043240532.1 mRNA downstream 360817 4922527 ~ 4931978 (+) True abcb6a
TU1199 other upstream 197209 4358007 ~ 4358296 (+) True G826
TU1197 other upstream 198245 4356698 ~ 4357260 (+) True G824
TU1118 other upstream 856412 3636707 ~ 3699093 (+) True G749
TU1095 other upstream 1214629 3334658 ~ 3340876 (+) True G727
XR_006252051.1 other upstream 1813293 2742079 ~ 2742212 (+) True LOC122353699
XR_006251076.1 other downstream 376473 4938183 ~ 4944841 (+) True prkag3a
XR_006251062.1 other downstream 405476 4967186 ~ 4976846 (+) False gtf3c3
TU1696 other downstream 1317750 5879460 ~ 5881134 (+) True G1168
TU1714 other downstream 1495694 6057404 ~ 6087655 (+) True G1183
TU1931 other downstream 1724148 6285858 ~ 6287198 (+) True G1318

Expression Profile