RNA id: XM_043246064.1


Basic Information

Item Value
RNA id XM_043246064.1
length 4049
RNA type mRNA
GC content 0.50
exon number 23
gene id rasa3
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2334161 ~ 2371135 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCGTCGCGCGCCGTTCAGTCCGGTGAGTCAGTCGCCGCTCGCGCCGGAGTACGGAGAGGAGAACGCGGAGGACGAACGGAAAACGGAAAAAGAGCTGGAGCTGCGAGCATGGCGGTCGAAGAGGAAGGTCTTCGGGTTTTCCAGAGCGTCAAAATAAAAATCGgGGAAGCGAAGAACATCCCTCCCTATCCGGGTCCGAATAAGATGCGGGATTGTTACTGTACAGTCAACCTGGACCAGGAGGAAGTGTTCAGAACCAAAACTATAGAGAAGTCTTTATgTCCGTTTTATGGCGAGGACTTTTATTGTGAAATCCCACGCACTTTCCGCCATCTGTCTTTCTACATCTTTGACAGAGACGTGTTCAGGAGGGACTCCAGCATCGGTAAAGTGGCCGTGAAGAAGGAGGACCTGCAGAAATACCACGGTAAAGACCACTGGTTCCCGCTGCAGCCGGTCTGTGCCGACTCAGAGGTGCAGGGAAAGGTTCACCTGGAGCTGCGTCTCAGTGAGGTCATCACAGACAGCGGAGTCGTCTGCCACAAGCTGGCAACACGGGTTCTGGAGTGTCAGGATCTGCCGATAGTGAACGGTCAGTGTGACCCGTACGCCGCCGTCTCGCTCCTCGGCCCCTCCAGGTCAGAAGCCAAGAAGACGAAGGTCAAACGGAAAAACAACAATCCTCAGTTTGATGAGGTCTTCTTTTTTGAGGTGACCAAACCTCTGAGCTACACCAAACGACACTTCGACGTGGAAGAGGACGACGTGGACAAGCTCGCGCtcaaGGTGGATCTGTGGAACGCCAGCAATCTGAAGTTCGGAGACGAGTTTCTGGGAGAGGTGCGGGTTCCTCTGAAGGTGCTGGGTCAGTCGGGCGTTCACGACGCATGGTACTTCCTTCAGCCCAGAGACAACGGCAATAAATCGGTGAAGGCTGATGAGCTGGGCTCGTTACGACTCAACATCGTTTACACGGAGGACCACGTGTTCCCCACGGAGCATTATAACCCGCTCCGAGACCTGCTGCTGCAGTCGGCCCACGTCGAGccCGTCTCGGCGTCAGCGGCTCATATCTTGGGTGAGGTGTGTCGTGAGAAGCAGGAGGCTGCTGTTCCTTTGGTGCGACTCTTCCTTCATTATGGTAAAATCGTGCCTTTCCTCAGCGCCATCGCTCACGCCGAGATCAGCCGCACGCAGGATCCCAACACCATCTTCCGGGGAAACTCGCTGACGTCTAAATGCATCGATGAGACCATGAAGCTTGCGGGGATGCACTACCTGCGCGTCACGCTCAAACCCATCATCGATGAGATCTGCGCCGATCACAAACCCTGTGAGATCGACCCGGTCAAGCTGAAGGAGTCTGAGAACCTGGACACCAACAGGGAAAACCTGCGTCAGTACGTGGACCGGATCTTCACCGTCATCACCAGCTCGGGTGTGAGCTGCCCGACGGTCATGTGTGACATCTTCTTCTCGCTGCGGGAGTCTGCTGCGTCACGCTTCCAGGtcGACCCGGATGTGCGCTACACGGCCGTTAGCAGCTTCATCTTCCTCCGTTTCTTCGCTCCTGCCATCCTCTCTCCGAACCTCTTCCACCTCCGCCCTCATCACCCGGATCCGTGCACGTCTCGGACGCTCACACTCGTTTCCAAAACCATCCAAACTCTGGGAAGTCTGGCCAAGTCCAAATCTGCCAATTTCAAGGAGTCCTACATGGCTGCGTTCTACGACTACTTCAACGAGCAGAAGTACGCAGATGCGGTGAAGAACTTCCTGGACCTGATCTCGTCCTCGGCCCGCTGGGATCAGAAGAGCATCGAGACACCCATCATGCTCAAGGAAGGGTTCATGATCAAACGAGCTCAAGGGCGAAACCGCTTCGGTCTGAAGAACTTCAAGAAGAGATGGTTCCGGCTGACCAACCACGAGTTCACCTACCACAAAACCAAAGGTAACGCAAAAGGAGAGGGCGCTCTGTGCAGCATCCCGATCGAGAACATCCTGGCTGTAGAGAGACTCGAGGAAGAGTCCTTCAAAATGAAGAAcATGTTCCAGGTCATCCAGCCAGAGAGGGCGCTCTACATCCAGGCCAATAACTGCGTGGAGGCGCGCGACTGGATCGACATCCTGACCAAGGTCAGTCAGTGTAACCGCAAGCGTCTGAGCACGTATCACCCCTCGGCCTTCCTCAACGGACACTGGCTCTGCTGCAAGCTGTCTGCGGACACAGCGGCCGGCTGCACGCCCTGCACCGGGGGACTTCCAGCCAACATCCAGCTGGACGTGGACGGAGACCGAGAGACGGAGCGCATCTACTCACTCTACAGCACATACATGGCCAAACTAGTCAAGATgcaggAGGCGTGCGGCAGCAAGTCGGTGTACGACGGGCCGGAGCAGGAGGAATACTCCACGTTCGTGATCGATGACCCGCAGGAGACGTACAAGACCCTGAGGCTGGTCATCTCCGCCGTGCAGACCCTGGAGCAGCAGCACACGCAGTACAAACGAGACAAGTTCAGGAAGACCAAGTACGGCAGCCAagaaCATCCAATCGGTGACCAGAGCTTCCAGTGCTACATCCGTCAGCAGTCAGAAAGCTCCACCTACTCCATCTGACCACGCCCCGTCTCCGTGGCAACAGGCGCGTCTCCAGACAGGAAACTGAGAAACGGCGAGGCGGCCTCAGACAAAAGATAAAGCTCAGCTGTTTTTATAAGACTTTAACCAATCAGCAGCCGCCGCGTGCTTCCGTGGACGATGTAGCTCCGCCTCGCGGCACCTTTTATCCTTTGATGATGTTTTTAAGCTAGGACGCGAGCAGACGTCTTCAGCCGtggatgtttttataaatgGAGCATCGGACAAAAGGACAGATCCCACAATCCTTTGCTTCGACAGGGTTTTGTTGGTGGACGTGAGACTTAGAAGCgtgttttgagaaaaatatCCATTCACACGAGTCCAGTGTTTGACGTCACGCCTGCAGAAGCAGCGCTGCATTGTgggaaacgtgtgtgtgtgtgtgtgtgtgtgttacagcaTGCAGACGTCCTCGTTCCAGCTGTTTCCAGCATGTGGCGTGACGCTGAGGGTTTGTGGGTCCAGTCGTGTTCAGCAACACACTTCTTGTGTTTTTATACTTTCTGTTGTGTCTTCACTGATATCCTGCTCCggttacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtatgaaaCCAGGGCGCATGAGTGTGTTTCATtgattaattatgaataataactCCCAGTTCATCACATCACACTTTATAGAGATATTTAATATGGATGTGATTATTCTGACTATCAAGATCATGTCTGGCTCAGATTTCACccttaatcatatatatatataattaaaagaatatattattcatttaaaaatcattctacaCTATACAATTTTTTCatgtatatgtaatgtataagCATTAAGACAGTTAAACACTTTTACAACAAAATTCACATTTCACTGTAATGTATGGTAGCTCCTTTCTgccacaaaatgaaaaaggtgTTTGTGTCTTCATCCcagagtttatatctcgcacttctgtgtttttatttgttttttatccatttttatttttattatttgctattCTGACTAtcattgtgaagaaaaaaaaagtgaacgacaacatttttttttgttgcattatccCGTGTCAGAATCAAGCTAccatagtaataaataaatactgatgcTTCATATTGTTTGAATGATCTGAGGGTGAAGCATGAGCTGGAGGTCCTTGTGTTTTAGTACGGTGTTGTATTTCTGTTAAAACACGGCTCTTGTGTTTCTCTCCGTCCCTCGGTGATGCATGTTTCACACGTTTTAACACAGCCCTGTTTTCTTGCCCAAAtgaattgatatttatttttatatcacagaataatgtttttgtgaagaaaaaacaaatcaagtCAAATCTCAGAGCAATCCAAGCGCACAGTATGAAGTATGCAATAATATACTCAATAATGAGTGAAGGAACTGAGATCAca

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0002574 thrombocyte differentiation biological_process
GO:0043363 nucleate erythrocyte differentiation biological_process
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K12380 RASA3; Ras GTPase-activating protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU668 lncRNA upstream 6831 2323285 ~ 2327330 (+) True G457
TU640 lncRNA upstream 57890 2275992 ~ 2276271 (+) True G439
TU654 lncRNA upstream 58820 2275007 ~ 2275341 (+) True G450
TU610 lncRNA upstream 158545 2174322 ~ 2175616 (+) True G415
TU599 lncRNA upstream 214770 2119116 ~ 2119391 (+) True G408
TU641 lncRNA downstream 1580 2372715 ~ 2373156 (+) True G440
TU681 lncRNA downstream 49341 2420476 ~ 2421647 (+) True G463
TU721 lncRNA downstream 118348 2489483 ~ 2491877 (+) True G485
TU708 lncRNA downstream 122437 2493572 ~ 2499020 (+) False setdb2
TU709 lncRNA downstream 122437 2493572 ~ 2499020 (+) False setdb2
XM_043239393.1 mRNA upstream 23773 2301741 ~ 2310388 (+) True LOC122345332
XM_043239402.1 mRNA upstream 23773 2301741 ~ 2310388 (+) False LOC122345332
XM_043239430.1 mRNA upstream 23773 2301802 ~ 2310388 (+) False LOC122345332
XM_043239419.1 mRNA upstream 23773 2301892 ~ 2310388 (+) False LOC122345332
XM_043239438.1 mRNA upstream 23773 2301896 ~ 2310388 (+) False LOC122345332
XM_043244263.1 mRNA downstream 792 2371927 ~ 2387649 (+) True pros1
XM_043246771.1 mRNA downstream 19742 2390877 ~ 2406287 (+) True gas6
XM_043246780.1 mRNA downstream 19749 2390884 ~ 2406287 (+) False gas6
XM_043238321.1 mRNA downstream 98338 2469473 ~ 2481559 (+) True adprhl1
XM_043238312.1 mRNA downstream 99184 2470319 ~ 2481559 (+) False adprhl1
TU616 other upstream 141697 2185859 ~ 2192464 (+) True cyyr1
TU311 other upstream 892495 1439073 ~ 1441666 (+) True LOC122327253
TU309 other upstream 892722 1439073 ~ 1441439 (+) False LOC122327253
TU310 other upstream 892722 1439073 ~ 1441439 (+) False LOC122327253
TU190 other upstream 1213440 1119719 ~ 1120721 (+) True G136
TU731 other downstream 112538 2483673 ~ 2485988 (+) False grtp1a
TU718 other downstream 140586 2511721 ~ 2513859 (+) False pcid2
TU696 other downstream 153390 2524525 ~ 2527244 (+) True G474
TU717 other downstream 223796 2594931 ~ 2596302 (+) True G482
XR_006252051.1 other downstream 370944 2742079 ~ 2742212 (+) True LOC122353699

Expression Profile