RNA id: XM_043239393.1


Basic Information

Item Value
RNA id XM_043239393.1
length 4253
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC122345332
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2301741 ~ 2310388 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCATCTCCTACATCATGCTCTATTTCTCAGTGTTTGTGTGGATGTGCCTCTGCTTCATGAATCTCCAGCTAAATATAGTCAGAGTGACGCTGGAGAGCTGCGTGATGCCCGTCTATAACCGGCTGAAGGCTGAGGATGCAGCTGCAGAAGCGCTAACCGGATCAACAAGTCAGCGAGTAAATATTATGATGGATTTATCCGAGTCTGGAGATGCAGATGACACAGAAAAGACGGATGGGAGCATAAACACCGCAAAAGATGAAGACAAAGAAACGCATGACGAAGTCGTCCCTGTGCGGAAGGCGTCCTGGGAGCCCAGCGTGCTTTCCACCATCGGAAAGGAAGTCCATTATTTCGCCGGTCATGAGATCAGCATCTGGGAGTCTCTCGATTCATTTGGTTCTATCATCTGGCCAGCAGCTCTGGCTCTGTGTCGTTTCCTTGAGTCTAAACAAGCGACGGTTGACCTGGTTGACAAGGCCGTGTTAGAGATCGGCGCCGGCACAGGTCTCGTTTCCATCGTGGCCAGTCTGCTGGGTGCTTGGGTGACAGCGACTGATTTGTCTGAAGTCCTCGGGAACCTGAGATGCAACCtgtccagaaacacacggggcCGCTGTCGATACACACCGCAGGTGGCAGAGCTCTCTTGGGGATATGAGCTCGACAAGACCTTCCCTCATTCGGTCTACAGATACGACTACATATTAGCAGCCGATGTGGTCTATCATCACGACTTCCTGGAAGAATTACTAGTCACCATGCGGCACTTCTGCCAGCCGGGTACGACCCTCATATGGGCCAACAAGACCCGCTTCAACTCTGATCTGGTGTTTGTGGAGAACTTCAAAAAGACGTTCAACACCACCCTGCTGGCAGACAACGGAGAGGTCAAGATTTACGCCGCCACCACAAGAGAAGAAAGTAGACTACAGGCATCAAAAGAGACTAAAGGGGATGCGAGGAAAGGAGTGGACGAGGATGAAACGGTCAGCTGTGAGACAGAGAAGAATGAAGGAAAGATTACATGGACAGAGCAGAAGCTTGTAGAACAGGTTCaagaatatgaaaataaagacGAGCAGTTTGGAGAAGAGCAGGCTACGGGGGATGCTGATGTGGAAAAACTGGAGGATGGAAATCTGAACAGCTTCGAAGACAACGACAACACGAACCTTGAAACTGAACCTGAGGATTGTGAAGATGAAGACGACGACTGTGAGATGGACTCGGCACTTCTTGAACAGAAATCTGAAGGAAGCACAGAGAACGATAAACAACAGGAGTACACAAGATCCTGGGCACCAACTATTTACTACAGACCTGGGAAAGAGGTTTACAATTTTTTGGGCACGGATATTAAGATTCAGGAGTCCATCGATTCTTACGGTGCTACTATATGGCCGGCGGCACTTGCACTTTGCAGATTCTTGGAAACGCCGCAGGGCCGTCAACACATTGATTTACTCGACAAATCAGTTCTTGAACTTGGAGCCGGAACCGGATTGCTTTCGGTTGTCATCACGTTATTGGGTGCCAAACTAACGGCAACGGATTTACCCGAGATACTAAGTAATCTGAGATACAACCTCAACAGGAACACGAGAGGCCGGCGGAGACACGAGCCCCTGATTGCTGAACTCTACTGGGGTCACAAGCTGGACGAGATCTTTCCTAGATCCACATACCGGTATGATTACGTGTTGGCGACTGATGTGGTCTATCACCACGGGTTCTTGGCCGAGCTGCTGGTCACCATGCGTCACTTCTGTCAGCCGGGAACTACTCTAGTCTGGGCGAACAAGGTCCGCTATGGTTCCGATCTGGGCTTCGTTGACAACTTTCTCAGATACTTTGAAATCATACTCCTCGAAGAGTTGGATGATGTGAGGATTTACATAGCGACCAGCAAGACACCGGAGCAGGAAGGCGACCAGGATCTAGAGTTGaacgaggaagaggaggacaaTTATGATGCTGGGGAGCAAATCTCTACAAACCAAGCAGAAGAAGAGGAACTGGTGTGTGATGATACTGAAAGTCCAGATGAGGCACAAGTAGACGAAGAACACCAGGATTTGGGAAGACCCGAGGAGGAAGCTCTACCTGCCAAAGCAGAACCCCCGGAGCACAGATCCTGGACTCCCGCCATCTACTACAGTCTAGGCAAGGAGATCTACTACTTTCTGgatcatgaaatcaaaattcaaGAAGCCATAGACTATTACGGAGGTGTGGTATGGCCAGCGGCATTGGCCCTTTGCCGATTCCTGGACACCCCAATGGGGCAACAGCAGATTAATCTGATCGATAGATCAACGCTGGAGCTTGGAGCAGGAACAGGCCTTGTCTCGATAGTCGCCACACTTCTTGGTGCTAAACTGACAGCCACAGATCTTCCAGAGATCCTCGGGAATCTGAGGTGTAACCTGAACCGGAATACCAGGTGGCACCGGAGACACGAGCCTCAGGTTACAGCACTGCGGTGGGGCTACAAGCTGGACGAGATGTTTCCCCGTTCCACGCATTATTATGATTACGTGCTGGCGGCCGATACGGTCTATCATCACGACTGCCTCGCGGAGCTTCTTGAGACCATGCttcacttctgtcaaaaggggacAACTGTAATCTTTGCAAACAAGGTCCGGTATCAGACAGATCTGGCTTTTCTTGAGAACTTTCAGAAAGCTTTTAACACCACATTTCTGACAGAGCTGGGTGAGGTGAGGATTTACTCAGCCACCCTGAGAATCTGACGACGTGAACTTTAACTACACTGCTGGCTCAGGTAGAGAAGACATTCGGCTCTGGAACATGCTTGTTTGAGGAACCGCTGCAGACAattcacattgttttttttaaatcaacgtTAAGTTACCTAGTCAATGTAGTGAATTATCAGATACGTTCATTTGGTATCCAAACACGGGACGAGACCTACaacaaatattgttacaatattTGGATCAGCCCAATTCTATTTTGCCAATTTGTCAATTCTTCATATATACTGCAAAAACGATCTTCTTCCTTATTAGAAAATATCTACAAATTCTGGAATTAAGACGTCTTTACTTGAAAGGTAGAACTACTTAAGATaggtcttgttttctgaaaaacaatattcaaattttgATAGTTCTTGCTTAAGACAAGTAAAAATGAATCTTTAGCCTCATATTTTACTCAATGTTTTTACTAGTTTTAAGCAAAAACcaaagaatatttaatattttaatctgaagtcatattaatatatttttttaatatttatactagaaaacaagacaaatactacagcagaatatattttttttgcagtgaacaAACTACGTTTAACTCCAATCCAGATTTCAAAACAGGATCCCTTTTGTATATGGccaactaaaattaattttttttttttaatttttagtaaacCAATagactatatatttatatggtttCATGTGATATTAAAGGAGATCCAGTATGAAGAGTCAAATCAGAATTCAGCTTGTCATCTTTGATAGATTTGATTTGGActgaattgcaaaataaaaaaaactatgaacaTTAAACCCTCAAAATaagatttgaaaaagaaatctgaatcgtctgcactgaaaataaaaccagGCTGATTATAGACATAGACgcttatgaaaaatgtaattttgtgaaCCTAGATTAGAACAAGACTTATAAAGTTTGTAACTCAAGCTTTGCACAGATATACAGTGAATACTGTAGTTATTCATGAAACAAATTCCAACAAAACATCTTAATCTTAaaagaatcttaaaaaaaaaaaaaaaacacatccaaTTATTAAAAGGTAAACAATGATGTTTAAAcagttgaatttatttaaaacaatgtgcTGTAACGAAAGAGTGGTGTTTGAGAAATCAACATTTCAGATGAAATACATTTCttcatgaaaatgatttattgtgcTATGCACATAACAACAGCTAAGACTATGATCttacaaatattgtttattatatcgGAAAACAATCTAATGTGGATCTAAAAAAGGTCAACTTTAatatttacaacttttttttaacatttgtactAAAAAGTAAACCGTGATTCAGCATGTTTGTCAGAAAGATGGACAAAATACGGTCAGTTCCAGAtccttttattcatcaaatacaTTGACTGTGTTAACAAAATAACCGGCTGTTACTTCTGAAACAAtggatatataaaataacacctACCTACTCTATGCATGAATTAAAAGGACTTGAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU640 lncRNA upstream 25470 2275992 ~ 2276271 (+) True G439
TU654 lncRNA upstream 26400 2275007 ~ 2275341 (+) True G450
TU610 lncRNA upstream 126125 2174322 ~ 2175616 (+) True G415
TU599 lncRNA upstream 182350 2119116 ~ 2119391 (+) True G408
TU595 lncRNA upstream 219921 2081472 ~ 2081820 (+) True G404
TU668 lncRNA downstream 12897 2323285 ~ 2327330 (+) True G457
TU641 lncRNA downstream 62327 2372715 ~ 2373156 (+) True G440
TU681 lncRNA downstream 110088 2420476 ~ 2421647 (+) True G463
TU721 lncRNA downstream 179095 2489483 ~ 2491877 (+) True G485
TU708 lncRNA downstream 183184 2493572 ~ 2499020 (+) False setdb2
XM_043239469.1 mRNA upstream 1337 2297222 ~ 2300404 (+) True mettl21e
XM_043239480.1 mRNA upstream 5040 2286139 ~ 2296701 (+) True ercc5
XM_043236645.1 mRNA upstream 20055 2276446 ~ 2281686 (+) True trmt10c
XM_043236657.1 mRNA upstream 27519 2271978 ~ 2274222 (+) False si:ch73-41e3.7
XM_043246064.1 mRNA downstream 23773 2334161 ~ 2371135 (+) True rasa3
XM_043246072.1 mRNA downstream 23773 2334161 ~ 2371135 (+) False rasa3
XM_043244263.1 mRNA downstream 61539 2371927 ~ 2387649 (+) True pros1
XM_043246771.1 mRNA downstream 80489 2390877 ~ 2406287 (+) True gas6
XM_043246780.1 mRNA downstream 80496 2390884 ~ 2406287 (+) False gas6
TU616 other upstream 109277 2185859 ~ 2192464 (+) True cyyr1
TU311 other upstream 860075 1439073 ~ 1441666 (+) True LOC122327253
TU309 other upstream 860302 1439073 ~ 1441439 (+) False LOC122327253
TU310 other upstream 860302 1439073 ~ 1441439 (+) False LOC122327253
TU190 other upstream 1181020 1119719 ~ 1120721 (+) True G136
TU731 other downstream 173285 2483673 ~ 2485988 (+) False grtp1a
TU718 other downstream 201333 2511721 ~ 2513859 (+) False pcid2
TU696 other downstream 214137 2524525 ~ 2527244 (+) True G474
TU717 other downstream 284543 2594931 ~ 2596302 (+) True G482
XR_006252051.1 other downstream 431691 2742079 ~ 2742212 (+) True LOC122353699

Expression Profile