RNA id: XM_043236645.1


Basic Information

Item Value
RNA id XM_043236645.1
length 2703
RNA type mRNA
GC content 0.47
exon number 4
gene id trmt10c
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2276446 ~ 2281686 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acagagGGCCCATTAGGCGAGGTCGATTTCCGCACGGTCAGCTTTTATTGTTGCACTCCGACGTCCACATGACAGCAGGCAGCGTGTCCTTCTGAGGCTCCGTGTTGACTTCTGagtgaacacacacaacactgatGATATGAAATGAGGAGACCCTGAGGAGTGTTTCTGTGATGATGTTCCTGCGCTCCTGTTCGTTCGCTCTGAGACGCACAAACCCTCACGTCTCCCTCAGAGCCTTCAGCTCCAGCCGCAGCGGCGGGAAAGAACACGGCGCTCTGGATCTGGACTCCTGGAAGGCGGTGATGAGGTCTCAAGCGCTGCGGGAGGAGGGGGTCACACAGCGAGGGTCCTCGGCGCTGGACAGCACCCGCCAGCTGGTGGAGATCTGGCATCAAGCGGGGAAGTTAGTTCCCGAGAACATCACAGACGAGGAGCTGGAGGAACTCAACCAGCTCACGGCCAGAGCAGCCAAGAAAAAGTACCTCAAGTTCCTGGCCATTAAAGAATCGTACAAGAAAGCCAAGACAAAGAAGCAGGAGACACAGAGCTCTGAGGAGAGAGTGGAAGCAGAAGCAGAGGCTTTTCAAGAGAGCGAGAAGGAGCCTAAGAACAGCTTCCTGATGTATCTCCGGAGCAGCACGGTGGACCAGGCCCAGACCTGGAGAGCAGCCAGGGCCCTGCGCTTCGGTCAGCCGCTGGTGTACGACATGAGCTACGAGCAGCAGATGAGCCGGCAGGAGCTGAAGAACAGCGTGATGCAGCTGATGGAGAGCGAGGGCTGCAACCGGCGCGCCGCTGATCCCTTCCACCTGCACTTCTGCAGCCTGCGGCCGGACGGAGCCTATCTGAAGGAGCTGCTCAGACGCTACGGAGAGAAGACCTGGGAGCAGCTGATGATCACCGCCAGCGAGAAGACGCACCTGGAGATGTTTCCTCAGAGGGACCTGGTCTACCTGACCGCCGATTCCAAGCAGGTGCTGCAGGAGTTTGATCACAGTAAGGTGTACATCATCGGGGCGTTGGTGGACCGCTCCGTTCACACGGGACTCTCTATGGCCAACGCCAAACGCCAGCGACTGGCCACGGCTCGCCTGCCTCTGGACGAGTATCTGAACTGGGAGCGAGGAGCCAAGACCCTGACCCTGGACCAGATGATGCGCATCATGATCACGCTGAAGGAGACGGGCAGCTGGGAGAAAGCGCTGGAGTTCGTGCCCAAGAGAAAACACTCCGGCTTCACGGGATTCACCAAGAGTCACTTCGTCCGGAACGATTCACCAAAGATTCGTTTCCCCGCTGGAGTTCAGAACAGAAGAGACAGACCGAGCTCTAATGACCGGCATTGAAGCTCTAATACTGTTTTGTTCTTGTcgttaattaaaaatgatgaatatGATGTTTCCTCAACACCGAATCAACAATTGCTCCCAAGTGAATCGTTGGACAAGGATCCATGCCCTTTTGAAACACTTTATCACTGAATTCCAGCCAAGCGCTTCCTGTTTTAACCACGGAGGTTTATAGAACagaaaagttaaacaaacaataaaaggaCAGCCATTGACGGCAGAAACCTCCAAACcaagaagaaaataagaaatcatATTTTGCATGCAAGCAATGAAGCATGTTTTAGGGTCTTTTTAAGACAATTAACCATATATTCACAGTACACTCtctctaaaaaagaaaagtgttcttattaaaatggggggaaaaaaacttatCATATTTGAATCCCAAAATCaagacaaaaattaaatgatatttagcCAAAGGATAGTGAGGCCTAATTTATGACCCTTAAACACATCAAAGTTTCAGAAAACACAATTTCTTAAAACAGTGCTGAATATTATCATCtgaaagcaatattttaaatgtaaatgagcaTAAACATAATCAGCTCAACCATGATTTACAAAGAGTCTTGGAAACGATCACTTCTGGTTTATTTCTATTCTTGGGGTGATATGAGCTGCACACGTTCCCTTCAGGATTCATTAAATAACATCAAACtcatatttcaaacttttggtAAAAGTAATATTTCCTCTTCttccattttaaacatttgttgcattaaaacacattttactagCAAAACATAAACAGGAGAAGTGGTTTACACtccaaactatttattttggtaatttaagagagataaaacagaaaaaaatgaaatgctttaaaaacaaataacacttCAAATATTTGTGAAGCATGAAATACAGTCACGGCATGATATAAACAAACTcaaatctctcacacacacacacacacacacacgacttcAAACACAAGATGTTTCACAAGAATGTAATTATTTCCTTTTAATTCGTCTCTTATTATCCTTGTTAATTATGATTCTTATTATTAAACTTTCTTTCAAACATTCAGATGAACATCATCTGAGTGAATCAATCGAATCACGGCGGTGTGAAACATCACGAGGAGGAAACTTACTGCATTAAATAAGACCCTACAGTGAGcctccgtcacacacacacacacacacacacactcacacactcagtGCATGGCTGAGATCTGAGGGATAGTTCTTTGGTGTTCTGGTCACAGTGTGCTGTCTAGAGCACGacgatctcacacacactccttctAGAGCATGAcgatctctctctcacacacacacacacacacacacacacactctctctagaGCACgacaatctcaca

Function

GO: NA

KEGG:

id description
K17654 TRMT10C, MRPP1; mitochondrial ribonuclease P protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU640 lncRNA upstream 175 2275992 ~ 2276271 (+) True G439
TU654 lncRNA upstream 1105 2275007 ~ 2275341 (+) True G450
TU610 lncRNA upstream 100830 2174322 ~ 2175616 (+) True G415
TU599 lncRNA upstream 157055 2119116 ~ 2119391 (+) True G408
TU595 lncRNA upstream 194626 2081472 ~ 2081820 (+) True G404
TU668 lncRNA downstream 41599 2323285 ~ 2327330 (+) True G457
TU641 lncRNA downstream 91029 2372715 ~ 2373156 (+) True G440
TU681 lncRNA downstream 138790 2420476 ~ 2421647 (+) True G463
TU721 lncRNA downstream 207797 2489483 ~ 2491877 (+) True G485
TU708 lncRNA downstream 211886 2493572 ~ 2499020 (+) False setdb2
XM_043236657.1 mRNA upstream 2224 2271978 ~ 2274222 (+) False si:ch73-41e3.7
XM_043236672.1 mRNA upstream 2224 2272004 ~ 2274222 (+) False si:ch73-41e3.7
XM_043236667.1 mRNA upstream 2224 2272046 ~ 2274222 (+) True si:ch73-41e3.7
XM_043247943.1 mRNA upstream 16421 2253619 ~ 2260025 (+) True LOC122351075
XM_043247951.1 mRNA upstream 16421 2254700 ~ 2260025 (+) False LOC122351075
XM_043239480.1 mRNA downstream 4453 2286139 ~ 2296701 (+) True ercc5
XM_043239469.1 mRNA downstream 15536 2297222 ~ 2300404 (+) True mettl21e
XM_043239393.1 mRNA downstream 20055 2301741 ~ 2310388 (+) True LOC122345332
XM_043239402.1 mRNA downstream 20055 2301741 ~ 2310388 (+) False LOC122345332
XM_043239430.1 mRNA downstream 20116 2301802 ~ 2310388 (+) False LOC122345332
TU616 other upstream 83982 2185859 ~ 2192464 (+) True cyyr1
TU311 other upstream 834780 1439073 ~ 1441666 (+) True LOC122327253
TU309 other upstream 835007 1439073 ~ 1441439 (+) False LOC122327253
TU310 other upstream 835007 1439073 ~ 1441439 (+) False LOC122327253
TU190 other upstream 1155725 1119719 ~ 1120721 (+) True G136
TU731 other downstream 201987 2483673 ~ 2485988 (+) False grtp1a
TU718 other downstream 230035 2511721 ~ 2513859 (+) False pcid2
TU696 other downstream 242839 2524525 ~ 2527244 (+) True G474
TU717 other downstream 313245 2594931 ~ 2596302 (+) True G482
XR_006252051.1 other downstream 460393 2742079 ~ 2742212 (+) True LOC122353699

Expression Profile