RNA id: XM_043236672.1


Basic Information

Item Value
RNA id XM_043236672.1
length 1358
RNA type mRNA
GC content 0.58
exon number 2
gene id si:ch73-41e3.7
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2271978 ~ 2274222 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTGATCACACACGTGTCCGTCAGGAACCAGGTCAGGATGCAGGAAAGCTCAGACTCGAGCCCGATTCAGTCCGACTTCCCGTACTCGTTTTCCGCCGACGGTCGCCTGCGCCACAGAGCGACCTCCGAACCCTACAGGTTCACGTTCAGACTGGACGACGTCCGCGGGACGGACCGGGAACACGGCGAGCTCTGCCGCTACATCACCCAGCACGTCTACCAGCTCCTCCAGAGGAGCTTCGGTCTGCTCCGGGTGCCGCTGGAGGACGAGGGGTTTGTGTTCGTGAGCCCGGGAGCGCTGGATCGTCCCGGGAGTCTCCTGCTTCTGATCCAGGACCGAGGGACGGTGCGGAGCGGCGTCTGGAGCTGGAAGCTGTCGGCTCACGAGGGACTGGAGCGAGGCAGTCAGATCCCGTACCTGTGCTGGGCGGCGCTGGAGTCCTGCGGCGTGATCGTCATGAACCCTAACGAGGGCGCGAGGACTCTGGAGCATCACGTGCGTTCGGTTTGGGAGCGCTTGGTTTCCCGGAGCGCCGCCGAGCACGTGCTTGTGGCCGCTCACGGATACGGAGGCCTGGGCTTCGTCGATCTTCTGTGTCACAATCCGGACGAGGTCCAGCGGCGGGTGAAGGCCGTGGCTTTCTTGGATTCGTCTCACAGTCTGTGGCATCAGCCGCTGGGGAAAGCCGGCCGGGACTGGCTGAAAGTGCACTCCAGGACGTGGATCCTGAGCAGCAAGCCTCTGAACCGCTCCGTCGGGTCGCTGAAGGCCGGGTCTCCGCAGATCTCCGCCGGCACCCGCTGCCACGACGCTGTGCCCGGCGTCTGCATGGAGTCTGTGCTTCGCTTCTTCAGCAGGAGCCTCAAACCCAGAGCCTCGGCGGCGCCGTCCGAGATCATCACCCGCAGCAAAAGCCGCAGAAACGACCAGAACCACAACCCCGTCTGACGGGTCCACACGCGCTCACATCTCGAATGAATAAATCACGCTGCATCAGAATGATGGTTTCTGTCTGATTGTCTGATAGTAGTAGTTTACCAAAATGTGAAATGATGACCCTCAGATCATCCCAGATCTGGAGGAgtgtgtctcagtaatggaagtgaatgggtgccgtcagaatgagagtctgataaaaacaccagAATAATCCGcagcactccggtccatcaggaGAAGACTGAACTCATCCagcatttagatattttaagcCTATAATCTATCATTTTAAACCCATtgtaattcataattaaacatGTGGCTGGTTGATTTTGACGTGAGAGACGAGGAGTGGCCCGTTTTCACTGGAAGAAGAATTagtggagtgctgtggattattctgatgctctcattctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610 lncRNA upstream 96388 2174322 ~ 2175616 (+) True G415
TU599 lncRNA upstream 152613 2119116 ~ 2119391 (+) True G408
TU595 lncRNA upstream 190184 2081472 ~ 2081820 (+) True G404
TU481 lncRNA upstream 320684 1936173 ~ 1951320 (+) False G320
TU480 lncRNA upstream 335357 1936173 ~ 1936647 (+) True G320
TU654 lncRNA downstream 785 2275007 ~ 2275341 (+) True G450
TU640 lncRNA downstream 1770 2275992 ~ 2276271 (+) True G439
TU668 lncRNA downstream 49063 2323285 ~ 2327330 (+) True G457
TU641 lncRNA downstream 98493 2372715 ~ 2373156 (+) True G440
TU681 lncRNA downstream 146254 2420476 ~ 2421647 (+) True G463
XM_043247943.1 mRNA upstream 11979 2253619 ~ 2260025 (+) True LOC122351075
XM_043247951.1 mRNA upstream 11979 2254700 ~ 2260025 (+) False LOC122351075
XM_043247934.1 mRNA upstream 11979 2254700 ~ 2260025 (+) False LOC122351075
XM_043247696.1 mRNA upstream 48035 2220888 ~ 2223969 (+) True atp5pf
XM_043240785.1 mRNA upstream 52268 2192925 ~ 2219736 (+) False appa
XM_043236645.1 mRNA downstream 2224 2276446 ~ 2281686 (+) True trmt10c
XM_043239480.1 mRNA downstream 11917 2286139 ~ 2296701 (+) True ercc5
XM_043239469.1 mRNA downstream 23000 2297222 ~ 2300404 (+) True mettl21e
XM_043239393.1 mRNA downstream 27519 2301741 ~ 2310388 (+) True LOC122345332
XM_043239402.1 mRNA downstream 27519 2301741 ~ 2310388 (+) False LOC122345332
TU616 other upstream 79540 2185859 ~ 2192464 (+) True cyyr1
TU311 other upstream 830338 1439073 ~ 1441666 (+) True LOC122327253
TU309 other upstream 830565 1439073 ~ 1441439 (+) False LOC122327253
TU310 other upstream 830565 1439073 ~ 1441439 (+) False LOC122327253
TU190 other upstream 1151283 1119719 ~ 1120721 (+) True G136
TU731 other downstream 209451 2483673 ~ 2485988 (+) False grtp1a
TU718 other downstream 237499 2511721 ~ 2513859 (+) False pcid2
TU696 other downstream 250303 2524525 ~ 2527244 (+) True G474
TU717 other downstream 320709 2594931 ~ 2596302 (+) True G482
XR_006252051.1 other downstream 467857 2742079 ~ 2742212 (+) True LOC122353699

Expression Profile