GENE ID: ENSDARG00000060345

Symbol Location Gene type Genome version Species
apoda.1 2: 37207799 ~ 37210397 (-) protein_coding GRCz11 Danio rerio

  • PPI (protein-protein interaction) results are shown above.
  • Green is ENSDARG00000060345 (apoda.1), yellow represents other genes.
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    • MARKER



    EXPRESSION

    Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
    PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development Iridophore (cluster: 18)
    		 marker
    		 DOI:10.1093/g3journal/jkac062
    GSE158142 (3dpf) head baseline 3dpf, untreatment Pigment cells (cluster: 18)
    		 marker
    		 DOI:10.1016/j.neuron.2020.09.023
    GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment
    GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/- Pigment cells (cluster: 19)
    		 potential marker
    		 NA
    GSE144944 (fgfr3 +|+) cranial vault baseline 1mpf, fgfr3 +/+ Pigment cells (cluster: 17)
    		 potential marker
    		 NA
    PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells Pigment cells (cluster: 10)
    Muscle cells (cluster: 4)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE161712 (M. marinum) granulomas disease adult, infected with bacteria of M. marinum Neutrophils (cluster: 8)
    		 potential marker
    		 NA
    GSE122680 (1.5dpf) retina baseline 1.5dpf, WT, untreatment
    GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone Iridophore (cluster: 9)
    		 potential marker
    		 NA
    PRJNA641144 (P_INV) tumor disease adult, ZMEL1-INV cells in vivo primary tumors Melanoma cells (cluster: 1)
    		 potential marker
    		 NA
    PRJNA641144 (P_PRO) tumor disease adult, ZMEL1-PRO cells in vivo primary tumors Melanoma cells (cluster: 4)
    		 potential marker
    		 NA
    PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish
    GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment
    GSE130526 (fin) dorsal and anal fin baseline adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
    GSE126647 (Pbx4-depleted) embryo growth 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
    PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development
    PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells
    PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development
    GSE158142 (1.5dpf) head baseline 1.5dpf, untreatment
    GSE158142 (2dpf) head baseline 2dpf, untreatment
    PRJNA608912 (wt_7dpi) heart regeneration 5mpf, wild type, 7 days post injury
    PRJNA608912 (wt_14dpi) heart regeneration 5mpf, wild type, 14 days post injury
    PRJNA608912 (kit_7dpi) heart regeneration 5mpf, kit mutant, 7 days post injury
    GSE150498 (nod2-|-, 1X DSS) intestine disease 6dpf, nod2-/-, 1X DSS
    GSE150498 (untreated ctrl) intestine baseline 6dpf, untreated ctrl
    GSE150498 (nod2-|-, 2X DSS) intestine disease 6dpf, nod2-/-, 2X DSS
    GSE150498 (DSS treated) intestine disease 6dpf, DSS treated
    GSE150498 (nod2-|-, 2X DSS+BZA) intestine disease 6dpf, nod2-/-, 2X DSS+BZA
    GSE150498 (wildtype, 1X DSS) intestine disease 6dpf, wildtype, 1X DSS
    GSE122680 (3dpf) retina baseline 3dpf, WT, untreatment
    GSE122680 (14dpf) retina baseline 14dpf, WT, untreatment
    GSE122680 (24hpf) retina baseline 24hpf, WT, untreatment
    GSE122680 (2dpf) retina baseline 2dpf, WT, untreatment
    PRJNA551501 (2mpf) thyroid gland baseline 2mpf, Tg(tg:mVenus-T2A-NTR)
    PRJNA551501 (8mpf) thyroid gland baseline 8mpf, Tg(tg:mVenus-T2A-NTR)
    GSE152982 (wild type) trunk baseline 1.25dpf, untreatment
    GSE163907 (24hpf) trunk baseline 24hpf, trunk tg(sox10:GFP) positive cells
    PRJNA641144 (M_PRO) tumor disease adult, ZMEL1-PRO cells in vivo metastases
    GSE159709 (melanoma) tumor disease adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
    PRJNA641144 (M_INV) tumor disease adult, ZMEL1-INV cells in vivo metastases
    GSE158099 (WT) whole body baseline 16dpf, cd41:GFPlow-WT
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/-
    GSE158099 (WT) whole body baseline 6dpf, cd41:GFPlow-WT
    GSE176129 (pdgfrb-positive) whole body baseline 5dpf, FACS-isolated pdgfrb-positive cells
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/-

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