Fish Single-cell RNA Database

GENE ID: ENSDARG00000009961

Symbol	Location	Gene type	Genome version	Species
rundc3b	16: 43077909 ~ 43118095 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000009961 (rundc3b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000004794	ccdc146	4: 20177526 ~ 20199224 (+)
ENSDARG00000033179	tmem243b	4: 9612574 ~ 9619557 (+)
ENSDARG00000025824	dmtf1	4: 9652216 ~ 9667410 (-)
ENSDARG00000087285	tmem182b	6: 14301214 ~ 14312611 (+)
ENSDARG00000061362	dipk1ab	6: 29102942 ~ 29143463 (-)
ENSDARG00000040246	rap2ab	1: 2222363 ~ 2240119 (+)
ENSDARG00000040374	tmem182a	9: 6915611 ~ 6927587 (-)
ENSDARG00000077553	rap2aa	9: 963627 ~ 970270 (+)
ENSDARG00000090140	tmem196b	16: 19677484 ~ 19681282 (+)
ENSDARG00000040352	crot	16: 28601974 ~ 28627568 (+)
ENSDARG00000009961	rundc3b	16: 43077909 ~ 43118095 (+)
ENSDARG00000010936	abcb4	16: 28629242 ~ 28658341 (-)
ENSDARG00000015856	slc25a40	16: 43126252 ~ 43139257 (-)
ENSDARG00000074796	dbf4	16: 43139504 ~ 43150489 (+)
ENSDARG00000060532	adam22	16: 43152727 ~ 43284939 (+)
ENSDARG00000075824	virma	16: 26680508 ~ 26717597 (+)
ENSDARG00000021787	abcb5	16: 19537038 ~ 19568795 (-)
ENSDARG00000071341	abch1	17: 24537185 ~ 24564677 (-)
ENSDARG00000015649	rap2c	14: 30975163 ~ 30983011 (-)
ENSDARG00000042214	tmem243a	18: 8912113 ~ 8916000 (+)
ENSDARG00000042213	NA	18: 8917766 ~ 8955573 (+)
ENSDARG00000005186	sp4	19: 2364552 ~ 2563324 (+)
ENSDARG00000021408	poglut3	21: 35041399 ~ 35056093 (+)
ENSDARG00000062056	elmod1	21: 22099300 ~ 22115192 (-)
ENSDARG00000019137	tram1	24: 14214831 ~ 14234824 (+)
ENSDARG00000104085	abcd3a	24: 31310640 ~ 31332087 (-)
ENSDARG00000077275	crispld1a	24: 14859238 ~ 14885354 (+)
ENSDARG00000098644	si:ch211-126j24.1	22: 38520209 ~ 38607504 (-)
--	fam69b	--

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	NA	NA	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain	NA	NA	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	NA	NA	NA
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)	NA	NA	NA
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo	NA	NA	NA
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	NA	NA	NA
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells	NA	NA	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	NA	NA	NA
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	NA	NA	NA
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	NA	NA	NA
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	NA	NA	NA
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver	NA	NA	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	NA	NA	NA
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated	NA	NA	NA
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	NA	NA	NA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS	NA	NA	NA
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	NA	NA	NA
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2	NA	NA	NA
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis	NA	NA	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	NA	NA	NA
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000009961

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences