Fish Single-cell RNA Database

GENE ID: ENSDARG00000104243

Symbol	Location	Gene type	Genome version	Species
eomesb	16: 55168245 ~ 55182394 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000104243 (eomesb), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000100591	sox32	7: 58823406 ~ 58826164 (-)
ENSDARG00000042526	sebox	5: 67371650 ~ 67382188 (+)
ENSDARG00000056163	slc25a51a	1: 18811679 ~ 18816806 (+)
ENSDARG00000037276	map9	1: 25737767 ~ 25749888 (-)
ENSDARG00000002445	prdm1a	16: 7430998 ~ 7443388 (-)
ENSDARG00000088805	nes	16: 29043813 ~ 29057849 (+)
ENSDARG00000104243	eomesb	16: 55168245 ~ 55182394 (+)
ENSDARG00000069252	mixl1	20: 43715157 ~ 43723860 (-)
ENSDARG00000043877	mmachc	20: 1385674 ~ 1393020 (+)
ENSDARG00000054537	nhsl1a	17: 30522764 ~ 30591223 (+)
ENSDARG00000062510	bcl11ba	17: 18117029 ~ 18180747 (+)
ENSDARG00000040463	slc25a51b	14: 4178236 ~ 4184702 (+)
ENSDARG00000052826	runx3	13: 45092766 ~ 45225980 (-)
ENSDARG00000021201	noto	13: 14976108 ~ 14978104 (+)
ENSDARG00000017821	gata5	23: 7379728 ~ 7391028 (+)
ENSDARG00000078970	il7r	21: 22429509 ~ 22435957 (-)
ENSDARG00000061580	kctd7	10: 32881586 ~ 32890617 (-)
ENSDARG00000078459	cux1a	10: 32898533 ~ 33156789 (-)
ENSDARG00000055100	cxcl12b	22: 26929554 ~ 26945493 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain	NA	NA	NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment	NA	NA	NA
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment	NA	NA	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	NA	NA	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	NA	NA	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	NA	NA	NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	NA	NA	NA
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	NA	NA	NA
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	NA	NA	NA
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment	NA	NA	NA
GSE158142 (24hpf)	head	baseline	24hpf, untreatment	NA	NA	NA
GSE158142 (2dpf)	head	baseline	2dpf, untreatment	NA	NA	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	NA	NA	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	NA	NA	NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	NA	NA	NA
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)	NA	NA	NA
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	NA	NA	NA
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000104243

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences