Fish Single-cell RNA Database

GENE ID: ENSDARG00000069478

Symbol	Location	Gene type	Genome version	Species
slc13a3	8: 28667021 ~ 28695383 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000069478 (slc13a3), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000019932	slc5a11	3: 18655673 ~ 18675688 (-)
ENSDARG00000040608	gcnt7	6: 56097971 ~ 56111829 (-)
ENSDARG00000056551	slc22a13a	2: 23731194 ~ 23745290 (+)
ENSDARG00000059923	slc25a47a	20: 53628534 ~ 53641863 (+)
ENSDARG00000069478	slc13a3	8: 28667021 ~ 28695383 (+)
ENSDARG00000055302	grid2	8: 28900689 ~ 29587703 (+)
ENSDARG00000020114	slc20a1a	8: 31057115 ~ 31075015 (-)
ENSDARG00000005518	slc5a9	8: 15254564 ~ 15268932 (+)
ENSDARG00000013575	rfx2	8: 20072987 ~ 20138251 (-)
ENSDARG00000089192	zmp:0000001267	17: 49529197 ~ 49543048 (-)
ENSDARG00000011618	slc26a2	14: 25438015 ~ 25452503 (-)
ENSDARG00000013855	slc12a3	18: 17583479 ~ 17598755 (+)
ENSDARG00000091232	kcnj1a.1	18: 48542900 ~ 48558420 (-)
ENSDARG00000100919	slc5a2	15: 14602520 ~ 14625373 (-)
ENSDARG00000079502	gal3st2	15: 40271177 ~ 40286196 (+)
ENSDARG00000003475	sult1st5	23: 24489077 ~ 24493811 (-)
ENSDARG00000021573	slc16a7	23: 9867483 ~ 9889330 (+)
ENSDARG00000055523	slc22a6l	21: 28478663 ~ 28494322 (+)
ENSDARG00000100709	agxt2	21: 11139175 ~ 11175010 (+)
ENSDARG00000070214	slc41a1	11: 37948839 ~ 37997419 (-)
ENSDARG00000006775	cass4	11: 27745618 ~ 27778831 (-)
ENSDARG00000044820	cstf1	11: 27817301 ~ 27827533 (-)
ENSDARG00000060829	car15	10: 42027285 ~ 42039169 (-)
ENSDARG00000013871	slc5a1	10: 17135631 ~ 17159761 (-)
ENSDARG00000059166	slc22a13b	24: 20006711 ~ 20016817 (-)
ENSDARG00000089974	NA	25: 28555584 ~ 28579761 (+)
ENSDARG00000005004	slc5a12	25: 35474987 ~ 35524166 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Epiphysis (cluster: 29)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000069478

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences