Fish Single-cell RNA Database

GENE ID: ENSDARG00000022493

Symbol	Location	Gene type	Genome version	Species
rad21l1	8: 49117506 ~ 49140645 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000022493 (rad21l1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000011783	stag2a	5: 23488055 ~ 23517747 (-)
ENSDARG00000056026	tprg1	6: 28752943 ~ 28790319 (+)
ENSDARG00000075354	espl1	6: 39668850 ~ 39700965 (-)
ENSDARG00000003904	sycp1	6: 49052741 ~ 49061086 (+)
ENSDARG00000061205	stag1a	2: 25019387 ~ 25108587 (+)
ENSDARG00000017744	smc2	1: 19535120 ~ 19561801 (+)
ENSDARG00000074225	si:ch211-269e2.1	9: 34433053 ~ 34482698 (+)
ENSDARG00000006092	rad21a	16: 48409066 ~ 48430272 (-)
ENSDARG00000043912	mei4	20: 812012 ~ 823276 (+)
ENSDARG00000068149	tprg1l	8: 48801402 ~ 48809736 (+)
ENSDARG00000009557	wrap73	8: 48816082 ~ 48847772 (-)
ENSDARG00000011855	aak1a	8: 48965767 ~ 49044259 (+)
ENSDARG00000025854	ddx51	8: 49065348 ~ 49089382 (+)
ENSDARG00000018361	sult1st3	8: 46559332 ~ 46581448 (-)
ENSDARG00000059397	tas1r2.2	8: 46610020 ~ 46619620 (+)
ENSDARG00000022493	rad21l1	8: 49117506 ~ 49140645 (+)
ENSDARG00000022684	fkbp1aa	8: 49169768 ~ 49172500 (-)
ENSDARG00000018653	acot7	8: 46758264 ~ 46894362 (-)
ENSDARG00000087601	gpr153	8: 46656170 ~ 46700278 (-)
ENSDARG00000053668	stag2b	14: 28486213 ~ 28527422 (+)
ENSDARG00000055883	dmc1	12: 19356623 ~ 19362186 (+)
ENSDARG00000035655	rad21b	19: 44068250 ~ 44091405 (-)
ENSDARG00000098897	pds5b	15: 33744549 ~ 33807758 (-)
ENSDARG00000055754	smc1a	23: 28693278 ~ 28713982 (+)
ENSDARG00000088950	sycp2	23: 12198242 ~ 12228363 (+)
ENSDARG00000058203	smc1al	23: 12840080 ~ 12897815 (+)
ENSDARG00000062137	stag1b	24: 26948712 ~ 26995164 (-)
ENSDARG00000019000	smc3	22: 29858535 ~ 29906764 (-)
--	wu:fb55g09	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	Epidermal cells (cluster: 14)	potential marker	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	Epidermal cells (cluster: 13)	potential marker	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)
PRJNA706197 (12hpf)	embryo	baseline	12hpf, FACS sorted sox10:nEOS cells
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA706197 (1.25dpf)	embryo	baseline	1.25dpf, FACS sorted sox10:nEOS cells
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000022493

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences